Query= MSMg01no427_a12.b1 MSMg01no427_a12.b1 CHROMAT_FILE:
MSMg01no427_a12.b1 PHD_FILE: MSMg01no427_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:47 2005
(317 letters)
>mm_chr1_38046742_38047458
Length = 717
Score = 613 bits (317), Expect = e-180
Identities = 317/317 (100%)
Strand = Plus / Minus
Query: 1 aggcaccattcctctgtgagagactgcggatcaaggtcatccccacgctagctctcttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aggcaccattcctctgtgagagactgcggatcaaggtcatccccacgctagctctcttaa 422
Query: 61 gagatggcaagacgcaagattatgttgttggattcaccgacctaggaaatacagatgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagatggcaagacgcaagattatgttgttggattcaccgacctaggaaatacagatgact 362
Query: 121 tcactacagaaactttagaatggagacttggttgttctgatgttatcaattacaggtaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcactacagaaactttagaatggagacttggttgttctgatgttatcaattacaggtaac 302
Query: 181 ctttagcaaaaacaaacaaacaaacaaaaatagacttttgaaactattcctagtcaatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctttagcaaaaacaaacaaacaaacaaaaatagacttttgaaactattcctagtcaatag 242
Query: 241 ttttagaaatctttttgaatatacttgtatttttgcttctgttttatttttttcaaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttagaaatctttttgaatatacttgtatttttgcttctgttttatttttttcaaaaga 182
Query: 301 tttatttatttattata 317
|||||||||||||||||
Sbjct: 181 tttatttatttattata 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_a12.g1 MSMg01no427_a12.g1 CHROMAT_FILE:
MSMg01no427_a12.g1 PHD_FILE: MSMg01no427_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:47 2005
(592 letters)
>mm_chr1_37884796_37885786
Length = 991
Score = 748 bits (387), Expect = 0.0
Identities = 485/543 (89%), Gaps = 41/543 (7%)
Strand = Plus / Plus
Query: 1 actctatagcaggctagccttagcctcagatctacctgcttctgcctcccaaagactggg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actctatagcaggctggccttagcctcagatctacctgcttctgcctcccaaagactggg 300
Query: 61 attaaaggctcaagcataattaaaagaaaacaaatctttaaaaacacacacacacacaca 120
|||||||||||||||||||||||||||||||||||||| ||||| | | | | |
Sbjct: 301 attaaaggctcaagcataattaaaagaaaacaaatcttaaaaaaaataaata-a------ 353
Query: 121 cacacacacacacacacacacacacacacacacacagagtggttaaactatgcctttagt 180
|||||||||||||||||||||||||||
Sbjct: 354 ---------------------------------acagagtggttaaactatgcctttagt 380
Query: 181 ctcagcacttgggaggcatggcaggcagatttctatgagtcctagaccagccagggccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ctcagcacttgggaggcatggcaggcagatttctatgagtcctagaccagccaggaccat 440
Query: 241 acagtgagactttgtctcaaacattagttaaccaggtaagtacaggtgtacaagtgaaca 300
|||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 441 acagtgagaccctgtctcaaacattagttaaccaggttagtacaggtgtaca-gtgaaca 499
Query: 301 tgtgtaaatatcaatgaactattttgtgagacttagggaaagcaagcagaagaaaagcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgtaaatatcaatgaactattttgtgagacttagggaaagcaagcagaagaaaagcat 559
Query: 361 ttttgtgtctatttcatggtaattctaaatctactacatggttttctttgatttctttat 420
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttttctgtttatttcgtggtaattctaaatctactacatggttttctttgatttctttat 619
Query: 421 acagtcttattttcaaaaatcatctagcatttagttcagaagtattttctattactgctt 480
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 620 acagtcttattttcaaaaatcatctagcatttagttcagaagtattttccattactactt 679
Query: 481 gaatgcaaacatttttacccaattcttagagaacttcactaagacctgtattaattaatt 540
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 680 gaatgcaaacatttttacccaattcttagagaacttcactgagacctatattaattaatt 739
Query: 541 aat 543
|||
Sbjct: 740 aat 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space: 570942
Effective search space used: 570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
