Query= MSMg01no427_c15.b1 MSMg01no427_c15.b1 CHROMAT_FILE:
MSMg01no427_c15.b1 PHD_FILE: MSMg01no427_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:57 2005
(566 letters)
>mm_chr1_56251851_56252816
Length = 966
Score = 1017 bits (526), Expect = 0.0
Identities = 556/566 (98%), Gaps = 2/566 (0%)
Strand = Plus / Plus
Query: 1 ttgctcctaactaatgcctgggtacagataataactcccaaatcacaattagatcatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctcctaactaatgcctgggtacagataataactcccaaatcacaattagatcatcct 260
Query: 61 ggaggccaagtcaacctcctcaaggagcatcattggctcctcagtgatgggaaaacataa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggccaactcaacctcctcaaggagcatcattggctcctcagtgatgggaaaacataa 320
Query: 121 tactcctcatgcccagtgtgtgcgcgatgcttgattacagtgtagattcagcaaatttta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tactcctcatgcccagtgtgtgcgcgatgcttgattacagtgtagattcagcaaatttca 380
Query: 181 atagctatggtcctgggcatgtggtccaccctagtggtaggaatgcatgcactcagcaac 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atagctatggtcctgggcatgtggttcaccctagtggtaggaatgcatgcactcagcaac 440
Query: 241 tctaattctaatatttgtcctgagtatcacaatggtagatctgatggactttctggttaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaattctaacatttgtcctgagtatcacaatggtagatctgatggactttctggttaa 500
Query: 301 accttaaaagtgtcagtgctgaggtgttagaacaactccctgtcaatagagtttcagaac 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 accttaaaagtgtcagtgctgaggtgtcagaacaactccctgtcaatagagtttcagaac 560
Query: 361 atccagtg-ttctcatgaagcttctaaaacagtagtattctcctttatggggacttacag 419
||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 561 ctccagtgctt-tcatgaagcttctaaaacactagtattctccttcatggggacttacag 619
Query: 420 ctttggtagtgaaaactaaataaaagaaaggctgagaaaataattaaatgcttcaatacc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctttggtagtgaaaactaaataaaagaaaggctgagaaaataattaaatgcttcaatacc 679
Query: 480 ctgcgaagtaggacaaagtacaaagttccatagaaacaattgtgccagtaatgtctgaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgcgaagtaggacaaagtacaaagttccatagaaacaattgtgccagtaatgtctgaga 739
Query: 540 atggggcttgtctgtagggtagagac 565
||||||||||||||||||||||||||
Sbjct: 740 atggggcttgtctgtagggtagagac 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_c15.g1 MSMg01no427_c15.g1 CHROMAT_FILE:
MSMg01no427_c15.g1 PHD_FILE: MSMg01no427_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:57 2005
(563 letters)
>mm_chr1_56436238_56437200
Length = 963
Score = 988 bits (511), Expect = 0.0
Identities = 550/563 (97%)
Strand = Plus / Minus
Query: 1 actttgtggggtagactaggcagagactaaaactagagtagaaagggtcagaagaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 actttgtggggtagactaggcagagactaaaactagagtagaaagggtcagaagaaaatg 704
Query: 61 tcaggatataggagtatttaggatggagggaacctggagatagacactaagtcacattct 120
||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 703 tcaggatatgggagtatttaggatggagggaatctggagatagatgctaagtcacattct 644
Query: 121 gaatgcacagaactggagaggagaggcagagaggcattatgtggtacccatgagcacgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 643 gaatgcacagaactggagaggagaggcagagaggcattatgtggtacccataagcacgta 584
Query: 181 caagtgtatgtgacataaatttaaatatatgtcatttgaatttaaaagccaaaacagtat 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caagtgtatgtgacataaatgtaaatatatgtcatttgaatttaaaagccaaaacagtat 524
Query: 241 gttggatatttatatcttcatgcaatctcctattcagtatttccttttattaactgactc 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gttggatatgcatatcttcatgcaatctcctattcagtatttccttttattaactgactc 464
Query: 301 ttcccatccttcacacttaaagtttttaaacctttacttaaatttaattttcttaggata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttcccatccttcacacttaaagtttttaaacctttacttaaatttaattttcttaggata 404
Query: 361 tctttagttaatgctctaaccgtttccctaaacaaaaaatgggaaaattatcatgtattt 420
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 403 tctttagttaatgctctaaccgtttccctaaacaaagcatgggaaaattatcatgtattt 344
Query: 421 atttcctgcatctctttttaaagccacatctaagcttcccatcacgtgctgaaacagtct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atttcctgcatctctttttaaagccacatctaagcttcccatcacgtgctgaaacagtct 284
Query: 481 aaggtttgcttgtctgtagattgacctgtgggtcaaagtcattctctcttaaaaacttag 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 283 aaggtttgcttgtctgtagattgacctgtgggtcaaagtcattctctcttcaaaacttgg 224
Query: 541 ccctccaggaatcctgaattatg 563
| |||||||||||||||||||||
Sbjct: 223 ctctccaggaatcctgaattatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
