BAC Information

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BAC

Clone NameMSMg01-427I06
Chromosome1 (Build37)
Map Location 37,897,616 - 37,898,176
singlet/doubletsinglet
Overlap geneTsga10
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik
Downstream geneEG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3, Lonrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427I06.T7 (MSMg01no427_i06.b1)MSMg01-427I06.TJ (MSMg01no427_i06.g1)
ACCAG520697AG520698
length764761
length of high quality
(start - end)
566 (51 - 616)251 (81 - 331)
definitionCHROMAT_FILE: MSMg01no427_i06.b1 PHD_FILE: MSMg01no427_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:25 2005CHROMAT_FILE: MSMg01no427_i06.g1 PHD_FILE: MSMg01no427_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCCTGATCCCTCTGCCTCTGGCTCCCAGGGGCTGAGAGGAT
ACTCGTGTGCAGTAGTACTCCTGGCTTGAGATTTTTTTCTCTTACAGCCC
TGAGGAGACAGTGTGGCTGCTGGCACTGCAGTCTCTCCTCAAGTGCCATC
ACCAAGGAATGAGGAACAAAAGCAAAACCGCCTTCTACAACCCCATCCCA
AACTGCACCACACTGGTCTACTTAGCGCCCTACCACAACTTTCACTAGGA
ATAAAGAGCTTTGTTGTTTGCCGAGCCATCATATACCTGTCTCCCAACCC
CTTTGATACTGTAATTCATATAAAATCACATTAGTTAGGCCCAAATTAGA
TAAATCAAATAATAAAAGTCAGAACTTGAGAAACAAACTAAAAGATTCAG
AAATGTCCTCCAAACCTACCCGGGAAGTTGGCGATGGGCGTCTCGGACTC
TTAGATCTATTTCTCATCATTTTTCTTAAATTCTGAGCTTCAGTCTTATA
ATAATCTCTGTCTGCTTCTAAAGTCTTGACAAAGGAATCCAGTCTAGAAG
GCGATGTATTTTGTGCTTTTTCAGTCTCTAAAATTATCTTGCCCAAGGAA
GAAAAAGTTAAGCAATTATTTTAAGCTTAAATTCTTTTTATAAGTATAAA
CCCCAAGAAAGTTTTCCAAAATATTAAATTTAAATAATTTTTAAAATATA
ACATGGTAATAACT
NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGCCGGGCGTGGTGGC
GCACGCCTTTAGTCCCAGCACTCGGGAGACAGAGGCAGGTGGATTTCTGA
GTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCATGGCTA
CACAGAGAAACCCTGTCTCGAAAAACTAANAAAAAAAAAAAAAAAAGAAT
TCACAAAGAAAACAAAAACACATTATAACTGTAGAAGGTAGACCAAGAAT
CTTCCTAAACATGCTCATGTCCTAAATCCCTTTTTATAGTGGGAATGTGG
AAGAAGAGCAGACAGACAATGAAGATGGCCTACATGACATGATTTAGCGT
TAAGCACTTAAACGTGTGTGGAGTAGGGAAATTACCTGGCTCGAGCCAAC
TTCGTCATGGCATTCTTCACGAGNAAAGGAGAGCCTTTTCCAGAGAGTCT
GGGATCAGAGGGAGATGTGGCTGAACACACAGGTAGAAGGTGGAAGGCTT
CGAGATGGACACTCGTGAGCCATGGAATGTGGGTGGCCTCTAAAGGCTTT
TAGAAGAGACCACAGAATGTTCTTGCTCANAAGCTCTACAAACACACTTG
CCTGCCAACCGTCCAGTCCAGCCCTGTCTTTCATTTACACAACTTGTAAG
CTATACCATGTGCGGTTGCTTTCCAGGTATTTTTGGGGTCATTTTCCTTC
TCTATCCCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_i06.b1 MSMg01no427_i06.b1 CHROMAT_FILE:
MSMg01no427_i06.b1 PHD_FILE: MSMg01no427_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:25 2005
         (566 letters)



>mm_chr1_37897411_37898376
          Length = 966

 Score = 1023 bits (529), Expect = 0.0
 Identities = 553/561 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctgatccctctgcctctggctcccaggggctgagaggatactcgtgtgcagtag 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctgatccccctgcctctggctcccaggggctgagaggatactcgtgtgcagtag 265

                                                                       
Query: 66  tactcctggcttgagatttttttctcttacagccctgaggagacagtgtggctgctggca 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 tactcctggcttgagatttttttctcttacagccctgaggagacagtgtggctgctagca 325

                                                                       
Query: 126 ctgcagtctctcctcaagtgccatcaccaaggaatgaggaacaaaagcaaaaccgccttc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgcagtctctcctcaagtgccatcaccaaggaatgaggaacaaaagcaaaaccgccttc 385

                                                                       
Query: 186 tacaaccccatcccaaactgcaccacactggtctacttagcgccctaccacaactttcac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacaaccccatcccaaactgcaccacactggtctacttagcgccctaccacaactttcac 445

                                                                       
Query: 246 taggaataaagagctttgttgtttgccgagccatcatatacctgtctcccaacccctttg 305
           ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct: 446 taggaataaagagctttgttgttcgccgagccatcagagacctgtctcccaacccctttg 505

                                                                       
Query: 306 atactgtaattcatataaaatcacattagttaggcccaaattagataaatcaaataataa 365
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 506 atactgtaattcatataaaatcacattagttagtcccaaattagataaatcaaataataa 565

                                                                       
Query: 366 aagtcagaacttgagaaacaaactaaaagattcagaaatgtcctccaaacctacccggga 425
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 566 aagtcagaacttgagaaacaaacaaaaagattcagaaatgtcctccaaacctacccggga 625

                                                                       
Query: 426 agttggcgatgggcgtctcggactcttagatctatttctcatcatttttcttaaattctg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agttggcgatgggcgtctcggactcttagatctatttctcatcatttttcttaaattctg 685

                                                                       
Query: 486 agcttcagtcttataataatctctgtctgcttctaaagtcttgacaaaggaatccagtct 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agcttcagtcttataataatctctgtctgcttctaaagtcttgacaaaggaatccagtct 745

                                
Query: 546 agaaggcgatgtattttgtgc 566
           |||||| ||||||||||||||
Sbjct: 746 agaaggagatgtattttgtgc 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)