BAC Information

Click to search

BAC

Clone NameMSMg01-427O18
Chromosome1 (Build37)
Map Location 52,388,273 - 52,388,603
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
Downstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427O18.T7 (MSMg01no427_o18.b1)MSMg01-427O18.TJ (MSMg01no427_o18.g1)
ACCAG521007AG521008
length766756
length of high quality
(start - end)
505 (78 - 582)---
definitionCHROMAT_FILE: MSMg01no427_o18.b1 PHD_FILE: MSMg01no427_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:56 2005CHROMAT_FILE: MSMg01no427_o18.g1 PHD_FILE: MSMg01no427_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTGCTTATCCCAAGAAATGCTTTTTCTGGATACATTCTC
TTCTTTGCTGGCAGTGACTGGTACCAACTTGCTCTTAATTATCTCCATTC
AATGCTAGTCATAACCGCCTGCCTACTCCACACTCAAACAGCCCTGCCCA
CAGGCTCCTCCCAGCCCCCTCAGGCTGAGTCATCTGCCTCTGCTCTCTCT
TCCCCTCCAGTCTCCCCACTACTGTCCCCTCCCCGCTGTGTTTCCCTGTT
TTACTTCCTTGCCCTTTTCAGAGGGACACCCTCAAACTGCCAAAGCTTCT
TTTTCTGTTCTCAGTATTGTGCGTGCTTGAAAATCTGGGGGGAAAAAAAA
AACCACAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCAC
AGAGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAT
CTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCGGGAG
TTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCA
CTGGAAAGAGGCCCTTTGGACTTGCAAACTTTATATGCCCCAATACAGGG
GAACGCCAGGGCCAAAAAGGGTGAGTGGGTGGTTAAGCGAAATTCCTCCC
TAACATTCTCCCTTATATCAATCCTTGAAAAGAAACCATTTTCCACTCTT
TTTATAATAGTTGTAG
NNNCCTATGCTCCGTTGATGCTGTACGGCGCCTGCTTCCANACXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAGTCCCATGCCATTTCAAATTCTATCTA
TCGGTACTAGAGATGGCCTCGACTAGCTCCTACACGCGGCATCTTTGTCC
AATATAACTTCTATAGGATGAAGATGTTCTTGATGATGGCGTGCACTTAA
CTGCTGCGCACTTACTAGCTAACTTTATACCCCTAAGAATATGTATTCGC
CCACAACAGCGCCTTTTGGGTATTGATTGAAAGCATGAGATTAATTTAAG
AAGAGCTCCTACCAGTGCAACTCAGATCTCCATCGCGAGCGCACTGAACC
ACGCTCTCCAGTTAGATTTCCGAGCTCTGTGGACACATGCCTTCGTTCAG
GATACTTTCCATGGCATGGAGTAATACCCTGGTCTGAGCTTCTAGATCAC
TGATCTAGCCTGTCCTCTTCTAACCTTCACAGCTAGGTCTTCAGTTCACA
TCATGGGCTTGTGGACCAGACTTCCCACCCAATTCTATGTGCCTGCCTAC
AAGACCCCTGTATGTTCCCATCTACATCTTCCAACCCAACAGCCCTAGAA
CACCTTATACTGTAACTAAGATGAGCTCTTCTCGCCTACCTTGGTCTCAC
TACACTTATTTATTATGCCGTGCAAGGCAACACTACCTGATCTCATTTAA
AATAAGTATTTCCAATTCCAGGATGACTGGAATTCATAGTTTTCATTTTG
AAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_o18.b1 MSMg01no427_o18.b1 CHROMAT_FILE:
MSMg01no427_o18.b1 PHD_FILE: MSMg01no427_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:56 2005
         (505 letters)



>mm_chr1_52388093_52388997
          Length = 905

 Score =  574 bits (297), Expect = e-168
 Identities = 325/337 (96%), Gaps = 7/337 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctttttctggatacattctcttctttgctggcagtgactggtaccaacttgctctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atgctttttctggatacattctcttctttgctggcagtgactggtaccaacttgctctta 452

                                                                       
Query: 61  attatctccattcaatgctagtcataaccgcctgcctactccacactcaaacagccctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 451 attatctccattcaatgctagtcataaccgcctgcctactccacactcagacagccctgc 392

                                                                       
Query: 121 ccacaggctcctcccagccccctcaggctgagtcatctgcctctgctctctcttcccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 391 ccacaggctcctcccagccccctcaggctgagtcatctgcctctgttctctcgtcccctc 332

                                                                       
Query: 181 cagtctccccactactgtcccctccccgctgtgtttccctgttttacttccttgcccttt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 331 cagtctccccactactgtcccctccccgctgtatttccctgttttacttccttgcccttt 272

                                                                       
Query: 241 tcagagggacaccctcaaactgccaaagcttctttttctgttctcagtattgtgcgtgct 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcagagggacactctcaaactgccaaagcttctttttctgttctcagtattgtgcgtgct 212

                                                
Query: 301 tgaaaatctggggggaaaaaaaaaa-ccacaaacaca 336
           |||||||||||     ||||||||| ||| |||||||
Sbjct: 211 tgaaaatctgg-----aaaaaaaaaacca-aaacaca 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)