BAC Information

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BAC

Clone NameMSMg01-428G15
Chromosome1 (Build37)
Map Location 79,287,451 - 79,287,695
singlet/doubletsinglet
Overlap genenone
Upstream geneSgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428G15.T7 (MSMg01no428_g15.b1)MSMg01-428G15.TJ (MSMg01no428_g15.g1)
ACCAG521385AG521386
length786781
length of high quality
(start - end)
246 (75 - 320)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no428_g15.b1 PHD_FILE: MSMg01no428_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:35 2005CHROMAT_FILE: MSMg01no428_g15.g1 PHD_FILE: MSMg01no428_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAAGGTGACAAATGGCATTTGTTTTGACCCAGCAAGGTAGA
ATTATTATGTGTACATGGTTCTCTGCAGGTAATATAATAGTTATACACAG
GCTAAAGGATTTTCAAAAGCAAAAGCAATTTGTGGATAAATAAGGCCCAC
TGATCATATACATTTATCTACTCCTTCCTGGAACCACTTTCCACAACAAC
AACAACAAGAACACAAAAAGTGCAAAGCTCTATGCCTCCACCAAAAGATA
AGTGATCAGGAGAGGAGATTTTATCTTGCCAGACTGTCAGCAGAACTGTG
AGGGCTGAATCATGCAGGGGTGAGTCATGGCCAATGTAACAGAGCAGAGA
TGCTAAAACCAAATTGTCTATTGGAGGTGGGTAGAGTGGCAATAATAAAT
ATGCTGATTCATCCATGCATCTCAGAGGAACAGTGATGTAACATATGAGA
GTCTCCCACACGTATTATAACCTACACCCTACACCTATTCCTTTGCATCT
CATCACCCTCACTTTGCTAATTCCTTATCATATTTATTTTTGATTTGCCT
CATGTGTTCTGTTACCAACCCCACTAATCTTGTTATCTTTGTGAACCCAA
TACCTTAGTCCCACTTTTTCTGTTCCCCCCGTCCATTCCCACGTTTTTTT
TCTCACCTCTGATTATTCCTGCCGCAGCCTANTGTCCCCAATTCCCTTCC
CTTTGTTTATTTCTTTCCCCTCTTTTTCTTTTTTCC
CCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGGTAGTTTTCTGCACTGTACTGC
CTTGCACTATTGATTAATTTATTTAGGGTGATTTTAATTACTGCTTCTAT
TTCACTGGAGGCTATAGGCATGTTTAACTTGTCTATGTTATCTTGATTTA
ACTTTTGTAGGTTGTATATATCAAGAGATTCACCTATTTCTTCTTGTTGT
TCCAGTTTGGTGAAATATATACTTAAAAAATTTTATCTCTTTATGGTCTC
TATATTTTCTCAGAGTCTGTTTTTATGTCTCTGTTTTCATGTCTAATTTA
ATTAATTTGCATATTTACTTTCTGTCTTTTGGCTAAACTGGCTAAACATT
TTTTAATCTTCTTGATTTTGTCAAAGAATTAAATCTTCAGTTCATGGTTG
ACGTTATTTCTAGTGATTTTAGCACCATGTTTGATCATTTCGTCTTGTCT
ACTCTTTTTGGCTGTGATTTCTTTTTGTTTTTTTGTCTCTCCACTTTTCT
TGAGTATTTGCCCACTTCCTGATCTTTTTTTTTCTCATCTTCCTCGCCGC
CTTCCTTTCCCTCTCCCTGCTTTTTTTTATTTTCCCCTTATTCCCCCCCC
CCTTTTTCCCTTCTCTTCCTTTCTACCTTTTATTTCTCTTTCCACACCTC
ACCTTCTCTCACCCCTCTTCTTTTCCTCCTTTTCTCGTTTCTCACCTCAC
TTTCTTTACCACTTTTTTTTTTCCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_g15.b1 MSMg01no428_g15.b1 CHROMAT_FILE:
MSMg01no428_g15.b1 PHD_FILE: MSMg01no428_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:35 2005
         (246 letters)



>mm_chr1_79287251_79287896
          Length = 646

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgttttgacccagcaaggtagaattattatgtgtacatggttctctgcaggtaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgttttgacccagcaaggtagaattattatgtgtacatggttctctgcaggtaata 260

                                                                       
Query: 61  taatagttatacacaggctaaaggattttcaaaagcaaaagcaatttgtggataaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatagttatacacaggctaaaggattttcaaaagcaaaagcaatttgtggataaataag 320

                                                                       
Query: 121 gcccactgatcatatacatttatctactccttcctggaaccactttccacaacaacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccactgatcatatacatttatctactccttcctggaaccactttccacaacaacaaca 380

                                                                       
Query: 181 acaagaacacaaaaagtgcaaagctctatgcctccaccaaaagataagtgatcaggagag 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagaagacaaaaagtgcaaagctctatgcctccaccaaaagataagtgatcaggagag 440

                
Query: 241 gagat 245
           |||||
Sbjct: 441 gagat 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)