ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGCTCGGCGGAAT
TCTTTCCACTTACTATGAATGTGTCCACAGGGCCACCGAACACAGTATTC
AAGTTGGCAGTGTAGGACAGGGCCAGACTCATGGGCACATGGAGCTGAGC
CGACATCCAGTCCATGTTGTTCCGCAGCTTGGCCTTCCTGCCTCCCTGGC
TCACAGTTACAGTAATCTATCCATCCATGCACCCACCCACCCATCCATCG
ATCCATCCATCGATCCATCCATCCACCCACCCACCCACCCACCCACCCAC
CCACCCACCCACCCATTTANCTACCTTCCAACACACCCAACCACCCACCA
AGCAAGCTTTTTTTTCCCCCCCCCCCTACGTATGGTTTTTCCTCTCTTTA
TTCTTTTCTTCACTCCTCCCCCCTTCCTTCTTTCTTTTTTTCCTTCCCTC
TTCCTTCCTCTTCCCTCATTATATCCTACTCCTCTTTCTTTCCCCTTCCC
TCTCTTGTCCACTCTTTTCCATTCCCTTTGTTTCCACCTTCTTTTCCCTC
CCTTTTTTTCCCTCTTCCCCCCTCCTTCCTCTTATTACCACTTTTCTACC
TCTTTCCCTTTTCCCTATTTTCTCTACTTTCTCNTTCCACTCTTTTACTT
TTTTATTTCCCTCCTCCTTTCCCCTTTCCCTTCCCCCCCCTCTCCCCTCA
TTTCATCTTTTCTTTTTTTTCCGCTCTTCCCCTTTATTTCCCCCGCTCTC
CTTCCTCTTTTTTTTTTTCCCCCTATTTTTCTCTCCTCCTTCTTTCCCCT
TCCTTCCTTCTTTTTCTTCCCCCTTTCTTTTTCG

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTGTTCATCATGAGCAACTTGATGGC
CTAGAAAAATAACCAACATCCTGGAAGAATAAAGCCTTTGACATTGTCAG
AAAACCTGGGATCTTCAGATGGTATGTGAGCCAGTTCTTCATTTTATGAA
GCCTAAGAAATAGCTTCCCTTATCCACAGTGTGAGAAAGGAAATTTTCTC
ATAAAACACAAAGGCAGTATTGCCAACTCAGGCAGAGATCTACAACACCA
TAGATCATCTTATGCCATGTATTTAGTCATCATTCCACACACGGCATCCA
CAGAAGGTATTACTTGGGGACCACGATTTTCCCAGGAAACCCAGGAGAAA
ATAAGCAAAAGAAAAGAGTGAAACTATTCATTGTTCTCGTAAAAAGAATG
CTCTTTTTTTATTTACAGAGACACTCACACAGCCCTAATTATGGAAACGT
TGTTCACAATAACCAAGTTATCAAATTAGCTTTATGTGCCCATCAACAGA
TGAATAGATAAAGAAAACGCTGGATACCTGTACAGAGGAGTACTATTTAG
TGGTAAAGGGGAATTAACTCTTGTTGCTTGCAAGAAAATGAACAGAACTG
GAGTTCATTGTGTCTGGTGAAATAAGGCAGACTCAGAGCATGTTTTCTAT
CATGTTATAACTTGGTTTAAGAAGGAGACAAGAATGGATGTAGAAATTTT
GGGGGAAAGGAGGCCTCTGGATTGGA

Query= MSMg01no428_g19.b1 MSMg01no428_g19.b1 CHROMAT_FILE:
MSMg01no428_g19.b1 PHD_FILE: MSMg01no428_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:36 2005
         (245 letters)



>mm_chr1_162111835_162112479
          Length = 645

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccacagggccaccgaacacagtattcaagttggcagtgtaggacagggccagactcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtccacagggccaccgaacacagtattcaagttggcagtgtaggacagggccagactcat 289

                                                                       
Query: 61  gggcacatggagctgagccgacatccagtccatgttgttccgcagcttggccttcctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gggcacatggagctgagccgacatccagtccatgttgttccgcagcttggccttcctgcc 229

                                                                       
Query: 121 tccctggctcacagttacagtaatctatccatccatgcacccacccacccatccatcgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tccctggctcacagttacagtaatctatccatccatgcacccacccacccatccatcgat 169

                                                                       
Query: 181 ccatccatcgatccatccatccacccacccacccacccacccacccacccacccacccac 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 168 ccatccatcgatccatccatccacccacccacccacccacccatccacccacccacccac 109

              
Query: 241 cca 243
           |||
Sbjct: 108 cca 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no428_g19.g1 MSMg01no428_g19.g1 CHROMAT_FILE:
MSMg01no428_g19.g1 PHD_FILE: MSMg01no428_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:36 2005
         (585 letters)



>mm_chr1_161952684_161953668
          Length = 985

 Score = 1108 bits (573), Expect = 0.0
 Identities = 582/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgttcatcatgagcaacttgatggcctagaaaaataaccaacatcctggaagaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgttcatcatgagcaacttgatggcctagaaaaataaccaacatcctggaagaataa 260

                                                                       
Query: 61  agcctttgacattgtcagaaaacctgggatcttcagatggtatgtgagccagttcttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctttgacattgtcagaaaacctgggatcttcagatggtatgtgagccagttcttcat 320

                                                                       
Query: 121 tttatgaagcctaagaaatagcttcccttatccacagtgtgagaaaggaaattttctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgaagcctaagaaatagcttcccttatccacagtgtgagaaaggaaattttctcat 380

                                                                       
Query: 181 aaaacacaaaggcagtattgccaactcaggcagagatctacaacaccatagatcatctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacacaaaggcagtattgccaactcaggcagagatctacaacaccatagatcatctta 440

                                                                       
Query: 241 tgccatgtatttagtcatcattccacacacggcatccacagaaggtattacttggggacc 300
           ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccatggaaatagtcatcattccacacacggcatccacagaaggtattacttggggacc 500

                                                                       
Query: 301 acgattttcccaggaaacccaggagaaaataagcaaaagaaaagagtgaaactattcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgattttcccaggaaacccaggagaaaataagcaaaagaaaagagtgaaactattcatt 560

                                                                       
Query: 361 gttctcgtaaaaagaatgctctttttttatttacagagacactcacacagccctaattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttctcgtaaaaagaatgctctttttttatttacagagacactcacacagccctaattat 620

                                                                       
Query: 421 ggaaacgttgttcacaataaccaagttatcaaattagctttatgtgcccatcaacagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaacgttgttcacaataaccaagttatcaaattagctttatgtgcccatcaacagatg 680

                                                                       
Query: 481 aatagataaagaaaacgctggatacctgtacagaggagtactatttagtggtaaagggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatagataaagaaaacgctggatacctgtacagaggagtactatttagtggtaaagggga 740

                                                        
Query: 541 attaactcttgttgcttgcaagaaaatgaacagaactggagttca 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attaactcttgttgcttgcaagaaaatgaacagaactggagttca 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)