BAC Information

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BAC

Clone NameMSMg01-428O10
Chromosome1 (Build37)
Map Location 106,247,462 - 106,247,935
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20, Rnf152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428O10.T7 (MSMg01no428_o10.b1)MSMg01-428O10.TJ (MSMg01no428_o10.g1)
ACCAG521758AG521759
length739734
length of high quality
(start - end)
241 (80 - 320)474 (78 - 551)
definitionCHROMAT_FILE: MSMg01no428_o10.b1 PHD_FILE: MSMg01no428_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:13 2005CHROMAT_FILE: MSMg01no428_o10.g1 PHD_FILE: MSMg01no428_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGATGGAT
CCGCGGAATTCTCAACTAACGAAACATTCAGGGCAAAGAAGTACTTTAAA
ATGTTCAATGTTCTTAGTCATCAGAAAACTGCAAAACTGTGAGATTCAAC
CTTGCAACCATCAGAATGGCTATGATCATAATGTCAAGGGGTAGCTCATG
CTGACAAGGATGTAGAGTAATGGGAGCACTATTCCATTGCTAGTGGATGT
GAAAAGTAACACAACCCTTCAGAAATCAATCTAGCAGGTTTTTCAGAAAA
TAAGGAAAATGTCAACCCTATTANATANTTAGCTATACCACTCACAGACA
TATACCCAAACATGTTGCTCCATGCCAGAAGGACACATACTTGACTATGT
TCATAGTAGCTTTATTCTTAATAACTAGAAACTACAGGCTCTTTGCCAGG
AGGTCCAGGCGGAGAGGAGAGATCCCAGTCCAGCCTAGTCTCTGGGGCTG
AAAAGAGATGGTGAGTGCTGCAGCTCAGATCTCCTGCTGTCCAACTCCGG
ATAATAACCACTCTGAGCTGGGATTCTGTTGAAACAAAAACTCATTTAAC
TGTGTCAGACTCTTTTGTTTACAAAGGTTTGAAAAAGGCCCGTCCTTGCT
CTTTTTTTTTTGTTTTTACAACACACACTACTCTCTTTCCATTTTTTTTT
TTCTCCTCTCTCTTATTCCCTTTTTTTTTTTCTCCACCT
NTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTTCTTTCTGGCAAGGTAAC
CAACAGTAGGGATCCCAAACACTGACAACACAGCACTTGTTTTTTAATAT
GTAGAGGGAAATGTCAGCTAAGAGAATTTTTTTCTAAGTGTTTGTCTTTT
CTGTGAACATTGTGATAGCTTCTAGTTAGAACTGAGCTAACTTTCTCATT
TTATCTGATATTTATGAATTTGGGGATCTTGGTTTTAAATTAATAAGTTT
AATTACATGGTCTTAGGTATTTATAATGTTGCACCATTTATTATTTGTTC
TATACAACTTTCTTCAGAGTTAGGAATATTTGTAAAATTGTAATCTGTCC
TGGACTTTTGATTTTACTTTTACATGTAAGTCACAGTTATCTTTTATTTT
AAATTTTATCTGCATAGTGCTTTACACGAATCTATGTTTATGTTTACAAT
GCACGTGAATGTCAAAAAGGAGAGCTTTTGGAACTCTCTGGAACGGGAGT
TACAGATGGTAATGAGATGCCATTTAGGTGCTGGGACTCAAACTTGGGTC
CTCTGGAATAGCTAACAGAGCCTTTAACCATGTAGCTGTCTCCAGTCCCT
AGGTTGCCGGAATTACCCTGGATGAACATTTGTAGAGGACATGATTATGA
CAGCACAAGTGGCTTCTATTGTTTACATCACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_o10.g1 MSMg01no428_o10.g1 CHROMAT_FILE:
MSMg01no428_o10.g1 PHD_FILE: MSMg01no428_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:13 2005
         (474 letters)



>mm_chr1_106247262_106248135
          Length = 874

 Score =  901 bits (466), Expect = 0.0
 Identities = 472/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagttctttctggcaaggtaaccaacagtagggatcccaaacactgacaacacagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttagttctttctggcaaggtaaccaacagtagggatcccaaacactgacaacacagcact 615

                                                                       
Query: 61  tgttttttaatatgtagagggaaatgtcagctaagagaatttttttctaagtgtttgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgttttttaatatgtagagggaaatgtcagctaagagaatttttttctaagtgtttgtct 555

                                                                       
Query: 121 tttctgtgaacattgtgatagcttctagttagaactgagctaactttctcattttatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttctgtgaacattgtgatagcttctagttagaactgagctaactttctcattttatctg 495

                                                                       
Query: 181 atatttatgaatttggggatcttggttttaaattaataagtttaattacatggtcttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atatttatgaatttggggatcttggttttaaattaataagtttaattacatggtcttagg 435

                                                                       
Query: 241 tatttataatgttgcaccatttattatttgttctatacaactttcttcagagttaggaat 300
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gatttaaaatgttgcaccatttattatttgttctatacaactttcttcagagttaggaat 375

                                                                       
Query: 301 atttgtaaaattgtaatctgtcctggacttttgattttacttttacatgtaagtcacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atttgtaaaattgtaatctgtcctggacttttgattttacttttacatgtaagtcacagt 315

                                                                       
Query: 361 tatcttttattttaaattttatctgcatagtgctttacacgaatctatgtttatgtttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tatcttttattttaaattttatctgcatagtgctttacacgaatctatgtttatgtttac 255

                                                                 
Query: 421 aatgcacgtgaatgtcaaaaaggagagcttttggaactctctggaacgggagtt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatgcacgtgaatgtcaaaaaggagagcttttggaactctctggaacgggagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)