BAC Information

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BAC

Clone NameMSMg01-429B10
Chromosome1 (Build37)
Map Location 121,808,602 - 121,976,572
singlet/doubletdoublet
Overlap geneTmem177, Gm101, Sctr, Tmem37
Upstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863
Downstream geneDbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429B10.T7 (MSMg01no429_b10.b1)MSMg01-429B10.TJ (MSMg01no429_b10.g1)
ACCAG521900AG521901
length740720
length of high quality
(start - end)
521 (55 - 575)381 (76 - 456)
definitionCHROMAT_FILE: MSMg01no429_b10.b1 PHD_FILE: MSMg01no429_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:27 2005CHROMAT_FILE: MSMg01no429_b10.g1 PHD_FILE: MSMg01no429_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,976,227 - 121,976,572)(121,808,602 - 121,808,976)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCTTCTTATATCACTCTCAGCCCTCAACTTAAAAAAAAATATTTT
AAACTAAACTATAAAAGAGTCACTAGCCACTTTTCTTCCCCTCTAATCCC
TCTCACCTATCCTACCGACTCTTCTCCACTGACCGCGTCTCTCTGTACTG
TTGCATACACACGTATGCCTCAGCATTCAAACCCGCCCTGTTCAGTCTCG
GCTCAGTGTTAATGCTGTGTACACCACCCCGGGGCTGGCTATCAGATTTG
GTACTAGATAAGCAGTTAGGGGTCTCATCCCAGGGCAGACTGTTTCTCCT
GGTCTCAGCAAGCCTTGGTTGCCTGTACCTCTTTGTTATGCTGGGACCAC
AGGAGATTTCTCTCTTCCAGGTTAGTGTGTCTATTGATCTTCAGGTCTTA
TTCAGCCATGTTGTTGAAGTATCTTGAGCAAAGCTTCCCTGTCATTTCTA
GGAAACACAGTCTCACAGCAGGTCCTCTGGCTTTTAGAGTCTCCCCACTC
TCTTTCCACGATGTTCCCCCGAGCCTTGGGACTAGGACTTGTGTGGTAGG
TAGATGGCCGTACAGGGCCAGAGCACCCATGATCACGCCCTTGCTATATG
TTCACTGGTTCTGGCTTTTTATTCTGGTCGCTGCCTGTTGTAAAACGCAT
TTCCCTGATGAAGAAGGAGAGCTACTCTCTCCTGCGGGAN
TCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGATTCAGTCAGTCTAAGAAAA
AAAAAAATTCATACTTACTTGAGAGCCCATACCACAACAGTTTATTTCCG
GCTGTGAAAAGGGATGCAGCTGGACAGGTTTATTGGCCAAAACCACAAGT
GGCAGTGTCACATGCTGACTAGTGTCCCTACTTCCACCAAGCTCCCATGG
TTGAGCCACATTTCCATTATCTTACGAGGTGGCTGTATTTGGAGCTTCGG
TCTATCATTGAAATAGAAACGGAAGGTTCGTGGGATGGCAATACTCAGAT
CTCACTGCTTTCGAGCTCAGATCCGGACACATACAGAAAAAATACCACAT
GAAGATCCAGGGGAAAGATGGCCATTTGTTAGCCTTGCTGAAATGCCCAG
GGAGCCTAGCTTGTCCACACCTGAGTCTTGGACCTCCAGTTCTGGAACTA
ATAAAAAATAAACTCCTGTTGTTCCAGTTATTTTTCCAAGAAACATCTTT
CCTTGTTAGCCTAACCCCCTGATAGCAAAAGGTTCATCTATTTTATCACC
GCTCCGCTTTAACATTCCTTAACACCGTTGTTTTTCCTCTATAAATGGTC
TTTCTTCTTCACTAACTCCCCTTTCCCCAAACTCCCCCCGATTTTTCCCC
TCTTCCCCCCCTCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_b10.b1 MSMg01no429_b10.b1 CHROMAT_FILE:
MSMg01no429_b10.b1 PHD_FILE: MSMg01no429_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:27 2005
         (521 letters)



>mm_chr1_121976223_121977143
          Length = 921

 Score =  586 bits (303), Expect = e-171
 Identities = 336/347 (96%), Gaps = 2/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcttcttatatcactctcagccctcaacttaaaaaaaaatattttaaactaaactataaa 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 350 tcttcttatatcactctcagccctcaacttaaaaaaaaatattttaaactaaactacaaa 291

                                                                       
Query: 62  agagtcactagccacttttcttcccctctaatccctctcacctatcctaccgactcttct 121
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 290 agagtcactagccatttttcttcccctctaatccctctcagctatcctaccgactcttct 231

                                                                       
Query: 122 ccactgaccgcgtctctctgtactgttgcatacacacgtatgcctcagcattcaaacccg 181
           |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct: 230 ccactgaccgcgtctctctgtactgttgcatacatacgtatgcctcagcatacaaacc-g 172

                                                                       
Query: 182 ccctgttcagtctcggctcagtgttaatgctgtgtacaccaccccggggctggctatcag 241
           |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 171 ccctgttcagtctcggctcagtgttactgctgtgtacaccacctcagggctggctatcag 112

                                                                       
Query: 242 atttggtactagataagcagttaggggtctcatcccagggcagactgtttctcctggtct 301
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 111 atttggtactagataagcagttaggggtctcatcccagggaagactgtttctcctggtct 52

                                                          
Query: 302 cagcaagccttggttgcctgtacctctttgt-tatgctgggaccaca 347
           ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 51  cagcaagccttggttgcctgtacctctttgtctatgctgggaccaca 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_b10.g1 MSMg01no429_b10.g1 CHROMAT_FILE:
MSMg01no429_b10.g1 PHD_FILE: MSMg01no429_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:28 2005
         (381 letters)



>mm_chr1_121808402_121809176
          Length = 775

 Score =  656 bits (339), Expect = 0.0
 Identities = 369/381 (96%), Gaps = 6/381 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggattcagtcagtctaagaaaaaaaaaaattcatacttacttgagagcccataccac 60
           |||||||||||||||||||||||||||||||  |||||||| |   ||||||||||||||
Sbjct: 201 actggattcagtcagtctaagaaaaaaaaaa--tcatactt-c---agagcccataccac 254

                                                                       
Query: 61  aacagtttatttccggctgtgaaaagggatgcagctggacaggtttattggccaaaacca 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacagtttatttccagctgtgaaaagggatgcagctggacaggtttattggccaaaacca 314

                                                                       
Query: 121 caagtggcagtgtcacatgctgactagtgtccctacttccaccaagctcccatggttgag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 315 caagtggcagtgtcacatgctgcctagtgtccctacttccaccaagctcccatggttgag 374

                                                                       
Query: 181 ccacatttccattatcttacgaggtggctgtatttggagcttcggtctatcattgaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 375 ccacatttccattatcttacgaggtggctgtatttggagcttcggcctatcattgaaata 434

                                                                       
Query: 241 gaaacggaaggttcgtgggatggcaatactcagatctcactgctttcgagctcagatccg 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaaacggaaggttcgtgggatagcaatactcagatctcactgctttcgagctcagatccg 494

                                                                       
Query: 301 gacacatacagaaaaaataccacatgaagatccaggggaaagatggccatttgttagcct 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 495 gacacatacagaaaaaataccacatgaagatccaggggtaagatggccatttgttagcct 554

                                
Query: 361 tgctgaaatgcccagggagcc 381
           ||||||||| |||||||||||
Sbjct: 555 tgctgaaatacccagggagcc 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 775
Length adjustment: 9
Effective length of query: 372
Effective length of database: 766
Effective search space:   284952
Effective search space used:   284952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)