Query= MSMg01no429_m07.b1 MSMg01no429_m07.b1 CHROMAT_FILE:
MSMg01no429_m07.b1 PHD_FILE: MSMg01no429_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:21 2005
(466 letters)
>mm_chr3_60681590_60682456
Length = 867
Score = 439 bits (227), Expect = e-127
Identities = 412/479 (86%), Gaps = 23/479 (4%)
Strand = Plus / Minus
Query: 5 gagggaagggttataatctaagctttggccaagggtgggagtgcaggaatggggaccata 64
||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 477 gaggggagggttacaatctaagctttggccaagggtgggagtggaggagtggggaccatg 418
Query: 65 gcttaaatggagcatca-ttcaagacttaagaaagcagggatgcagctaaagagcccaaa 123
|||| |||| |||||| || |||||||||||| |||||| |||||| |||| |||| ||
Sbjct: 417 gcttggatggggcatcactt-aagacttaagaa-gcaggggtgcagccaaagcgccccaa 360
Query: 124 gcccagtagtagttagtcccatgactgatacctgaagccttcc-atctatt-taagggcc 181
|||||| |||||| |||||||| |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 359 gcccagcagtagtcagtcccataactgctacctgaagccttcccatctattctaagggcc 300
Query: 182 accacacagctgtagcagagggcagggaaggcaaaggcaggcccaggccaagtgccagta 241
||||||||||||| || |||||| ||| ||||||||||| ||||||||||| ||||| |
Sbjct: 299 accacacagctgtggcggagggcggggcgggcaaaggcagacccaggccaagggccagca 240
Query: 242 t-attgtgattgtgtgatgtgtctgttcactgttgc-tta--t-tgc-------tcccaa 289
| |||||||||||| |||||||||||| ||||| ||| | ||| |||||
Sbjct: 239 gcag-gtgattgtgtgacgtgtctgttcacagttgcgttagctgtgcccaccgctcccac 181
Query: 290 agaaaactgatttcaacacaccttcttgatccca-aagttcaaccaggcagacagcggtt 348
|| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 180 aggaaaccgatttcaacac--cttcttgatcccagaagttcaaccaggcagacagcggtt 123
Query: 349 acaat-agacaggtaatgttacataccacaacttaggtatttcaaatggatgagaagtta 407
||| | | |||| | |||||||| | |||||||||||||||||||||||| |||||||||
Sbjct: 122 acactca-acagttgatgttacacagcacaacttaggtatttcaaatggacgagaagtta 64
Query: 408 gtatcagagcagtgtctcaggatgaagtctgagaggagtttcccctccagaactttgag 466
|||||||| |||||||||||||||||| ||||| |||| |||| |||| | ||||||||
Sbjct: 63 gtatcagaacagtgtctcaggatgaaggctgagtggagcttcctctccggtactttgag 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space: 390792
Effective search space used: 390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_m07.g1 MSMg01no429_m07.g1 CHROMAT_FILE:
MSMg01no429_m07.g1 PHD_FILE: MSMg01no429_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:21 2005
(502 letters)
>mm_chr1_49392535_49393436
Length = 902
Score = 926 bits (479), Expect = 0.0
Identities = 497/503 (98%), Gaps = 3/503 (0%)
Strand = Plus / Plus
Query: 1 agtacctttctgtctctcattaggaaagactattcttctaaaagataaatataaaatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacctttctgtctctcattaggaaagactattcttctaaaagataaatataaaatata 260
Query: 61 aaggagatgcggtaagatgcagtaaga-ttctgaataaagttactttgaacatagaaact 119
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 261 aaggagatgcggtaagatgcagtaa-atttctgaataaagttactttgaacatagaaact 319
Query: 120 gaacatacctagttgttcctccaacagagactgcataaagaaaatgtggcacaattacac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaacatacctagttgttcctccaacagagactgcataaagaaaatgtggcacaattacac 379
Query: 180 aatggagaaaacaatgacataatgaaatttgcaggcaaatgtgtatctaaaaaaaaccaa 239
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 aatggagaaaacaatggcataatgaaatttgcaggcaaatgtgtatctaaaaaaaa-caa 438
Query: 240 aacaaacaaaatacctgaaacaaacaaacattctgagtgaggaaactcagattcagaaaa 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 aacaaacaaaatacctgaaacaaacaaacattctgagtaaggaaactcagattcagaaaa 498
Query: 300 acaaacatgctatacacttacttataagtggacattagctgtaaaattgaggctaatgct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acaaacatgctatacacttacttataagtggacattagctgtaaaattgaggctaatgct 558
Query: 360 atggatatacaagcacaaagaggctgagtaataataggtagggcctaggtgggtaatgca 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 559 atggatatacaagcacaaagaggctgagtaataataggtagggcctaggtaggtaatgca 618
Query: 420 ttaatctctgtgggaagggaaagtagaatagattttgtagatggaatgagaccaggtgag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttaatctctgtgggaagggaaagtagaatagattttgtagatggaatgagaccaggtgag 678
Query: 480 gatagaaacagacacgaacaggt 502
|||||||||||||||||||||||
Sbjct: 679 gatagaaacagacacgaacaggt 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
