Query= MSMg01no429_m20.b1 MSMg01no429_m20.b1 CHROMAT_FILE:
MSMg01no429_m20.b1 PHD_FILE: MSMg01no429_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:24 2005
(565 letters)
>mm_chr1_65040833_65041797
Length = 965
Score = 727 bits (376), Expect = 0.0
Identities = 391/396 (98%)
Strand = Plus / Minus
Query: 4 ggaattccagaagttgcaacaggtagttgtggaaacagcagtgtttggaaacccttgggc 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaattccagaagtagcaacaggtagttgtggaaacagcagtgtttggaaacccttgggc 714
Query: 64 tgttcccagcggtgtaccctatcccggaacaccccatctcagtgcactccaccccagtgc 123
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgttcccagcggtgtaccccatcccggaacaccccatctcagtgcactccaccccagtgc 654
Query: 124 ctcccacccagtgcaccccgtctcggtgcaccccatcccggagcaccccgcccccttact 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctcccactcagtgcaccccgtctcggtgcaccccatcccggagcaccccgcccccttact 594
Query: 184 gtggcaaaagcactcaaagacttgaagtatcaaaaacaagcaagagaggaagcaaatgct 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 gtggcaaaagcactcaaagacttgaagcatcaaaaacaagcaagagaggaagcaaatgct 534
Query: 244 gtgcagacttcaaccctgagagagaagaaagccatgagctcagctggggagacctagcag 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atgcagacttcaaccctgagagagaagaaagccatgagctcagctggggagacctagcag 474
Query: 304 acaccatccagtgtggtctgtagtatgttttctggcaatttgtataagaaaaatggtaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acaccatccagtgtggtctgtagtatgttttctggcaatttgtataagaaaaatggtaga 414
Query: 364 aatgattaaattttctccaacaagaaatcacctttt 399
||||||||||||||||||||||||||||||||||||
Sbjct: 413 aatgattaaattttctccaacaagaaatcacctttt 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_m20.g1 MSMg01no429_m20.g1 CHROMAT_FILE:
MSMg01no429_m20.g1 PHD_FILE: MSMg01no429_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:24 2005
(417 letters)
>mm_chr1_64855765_64856583
Length = 819
Score = 754 bits (390), Expect = 0.0
Identities = 415/430 (96%), Gaps = 13/430 (3%)
Strand = Plus / Plus
Query: 1 agtctgtttgagcaagggctctcagaaatgaaggctgaataaataggaagctacggtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctgtttgagcaagggctctcagaaatgaaggctgaataaataggaagctacggtggg 260
Query: 61 tgtaacactcgaagcttctggatagcatttctttcttctctcaagctcagttcacctgta 120
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tggaacactcgaagcttctggatagcacttctttcttctctcaagctcagttcacctgta 320
Query: 121 ccctgcccccttccccaccccacaatgcagaccaaacatttaacacgcaattctcttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgcccccttccccaccccacaatgcagaccaaacatttaacacgcaattctcttaaa 380
Query: 181 aatataatgaactgaactaggtaaatggaaaactttt-gccaggttgctggcaaatgtgc 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aatataatgaactgaactaggtaaatggaaaactttttgccaggttgctggcaaatgtgc 440
Query: 240 agtttattattttggcacatatgtgacagctttattggacatttactctccatagatgct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttattattttggcacatatgtgacagctttattggacatttactctccatagatgct 500
Query: 300 ctccatatgccctgttggtgggcaagtaaaa-tgcaaatagaacaacagaaaataatcag 358
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ctccatatgccctgttggtgggcaagtaaaaatgcaaatagaacaacagaaaataatcag 560
Query: 359 ctttttttttttttt-----------aaacacggggtctcactatgtagccttggctggt 407
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttttttttttttttttttttttttaaacacggggtctcactatgtagccttggctggt 620
Query: 408 ctggaactca 417
||||||||||
Sbjct: 621 ctggaactca 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 819
Length adjustment: 9
Effective length of query: 408
Effective length of database: 810
Effective search space: 330480
Effective search space used: 330480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
