BAC Information

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BAC

Clone NameMSMg01-430A08
Chromosome1 (Build37)
Map Location 68,057,339 - 68,057,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430A08.T7 (MSMg01no430_a08.b1)MSMg01-430A08.TJ (MSMg01no430_a08.g1)
ACCAG522613AG522614
length1,525824
length of high quality
(start - end)
---242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no430_a08.b1 PHD_FILE: MSMg01no430_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:40 2005CHROMAT_FILE: MSMg01no430_a08.g1 PHD_FILE: MSMg01no430_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATACGCTCTCGTATGCTNCTTCTNNGGNGANGGGTNGTACAACTAGT
GATAGAAAGCCATACTATTGCTCCTCATATNCAGCANCGCAGNCTGAAAA
AAAAAAGAAAGAAANCATACTCACTCTATCATCAACATACTCTATNCTAT
CTCTATATTAANATATCTACATACATCTCTATATCATAAAACTCTAACCT
ATATCTATATCGTAACTATCCATCACCTAATCACACTCTCTCTCCAAAAT
CTACAACAATACNTATACACTACCCATCGCACCGATAACTTCATTCCCTC
CTATCCACATACTCCTATCACATACCTCACTCATCAAATCATAATCCTCN
CTACCTNACTCTGCACATTACATCAACACTCCATAACCTATCCCATCAGC
TCACTAATNTATCATNCATTATTCACAACATACTACNATCANCCACAGCC
GTTATCCACATTTNTACTCTACTCGCTCCTACTCGCCCCTCTTATCCATA
TACATCGTATTCACCTCCACCCTACAACATACACTTAATATCACCACATC
ACCTACTATACTATCACATATCAATCTTACATCTACTAATACATCATATA
CTNATANTATCCTATACTAACTCCTCTTCATATCCTTACTAATACATATC
TACATATACCCATACCATCCTCACTATATCATCTCCTTCTCCGTCATACT
AACTTCACCTCTCTCNTATTGATACATTACCCTCCCACCACACACATACC
CATATCTTCTACTTACTTCCTCCTCTCCTAACCCACTATCATTACTTATT
CATCCACATCAACTCTCCACACACACGTCACATAATATCGACACCACTCA
CCTGCTCTAATTCATCTCTCTCTCACTTTATTTATATCGACTCTCTTATC
CTCTNCTCACTTTCACTACTTTCATTCGCACTCTCTCAATTATTCTCACT
GCANCACTATCTCTTCTACTCTCCTCATCACCCTCTATTATAATTCATTA
TATTACACATATACTANCTACACACATCATATCACTTACACTTATATATA
TTATTATCAACTCATCACTTATATTATATATTATACACACACTATATAAT
CTCATATATACGTAATTATCTCACTCACCATATATTATACTATCACATCC
CCACACTTATACTCTACACTCAATTATTATACTATTATTANCNACTAATA
ATACACTCTCCACTCTAATATAATCTCTACTTATTCACTATCACTAGCAT
TCTACTACTCTCTATCCTTAATTAACCACTCATATATACTCACATCTATA
CTAGATGACTGATACTGACTACTATATACTATCATCATATCNCTCTTACC
ATCANTCTCTATCACATATCTTATATGCTCNCCTCTCTTCTATATCTACT
NTCCCCTCTTTACTCTCTCACCCTCTTCTCACCCGCCTGTCTCACTCTAC
ACACTACCTNTACTTATCATAAATCTGANTGTGATNTATCTCACAGATAT
CTCTCAAATCTCATTACCACATTAN
TTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGATGTTTGGTTTGTATAA
GCTCAGTATTTCAACATCCAATGGTAGAAAGAAAGTTTCAACAACAGGAC
TTAACAGGAAGAAACTAAATATGTGTACAATCACACAGCAGCCAATAATT
GACTCAGATCTGTGCTTCCCTGGAAGGTCCCACATATTTTGCTCTCTCCT
GTATGTTGTGTGGAAGTTAGCACATCTTAAATTTCAAACAAATGTTGAGA
AACATGGTCATCCAGTTAAGAGATTTTTATTTTGAGGAAATGACCTTTCT
CAGCTAGTGATTGTTAAATATCGAGGTTGTTCAAGAATAGAAAATTAGTT
GCTCTCTCGTTTCTTTGCTATATCCATTCTTACGCCTCGTAACACCTTTA
TGTCCCTTTACTTCCTTTCCCAATTATCTTTATTTTGGCTCTACTTGCTC
CTTTTACTTCCTATTTAGTTTTATAATCTTTTCCTCCCGTCTTACTCCGT
TCTACTATCCACATCCGCCTAATATCCTACTTTTATCTTTTTGTCATTAT
TTAACCTCCTTTATTACTCTTCTTTTTTTTATCCCTCCGTCTTTCTCCCT
CCTACAATTTCCGTCGCCGTCTTCGCATTTCTTCCTACCCCCCCCCCTTT
TTTTATTCTTCGTCCCCCTCTCCTATTTCTCTCTTTATATTCATCCTCTT
TCTTTCTTACCTTCTATTCCTCCTATTACTCCCTTTTTTATCCTCTCCTT
TCACCTATATTCCCCCTCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_a08.g1 MSMg01no430_a08.g1 CHROMAT_FILE:
MSMg01no430_a08.g1 PHD_FILE: MSMg01no430_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:40 2005
         (242 letters)



>mm_chr1_68057139_68057780
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgtttggtttgtataagctcagtatttcaacatccaatggtagaaagaaagtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggatgtttggtttgtataagctcagtatttcaacatccaatggtagaaagaaagtttc 260

                                                                       
Query: 61  aacaacaggacttaacaggaagaaactaaatatgtgtacaatcacacagcagccaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaacaggacttaacaggaagaaactaaatatgtgtacaatcacacagcagccaataat 320

                                                                       
Query: 121 tgactcagatctgtgcttccctggaaggtcccacatattttgctctctcctgtatgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactcagatctgtgcttccctggaaggtcccacatattttgctctctcctgtatgttgt 380

                                                                       
Query: 181 gtggaagttagcacatcttaaatttcaaacaaatgttgagaaacatggtcatccagttaa 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggaagttagcacatcttagatttcaaacaaatgttgagaaacatggtcatccagttaa 440

             
Query: 241 ga 242
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)