Query= MSMg01no431_g08.b1 MSMg01no431_g08.b1 CHROMAT_FILE:
MSMg01no431_g08.b1 PHD_FILE: MSMg01no431_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:41 2005
(448 letters)
>mm_chr1_181094395_181095239
Length = 845
Score = 762 bits (394), Expect = 0.0
Identities = 432/450 (96%), Gaps = 11/450 (2%)
Strand = Plus / Minus
Query: 1 tgtaactaacctgaagtaatggtcccttccaaaggtcagtgctctttatatggtaataat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 643 tgtaactaacctgaagtaatggtcccttccaaaggtcagtgctgtttatatggtaataat 584
Query: 61 ggattttccccccattaacatttaattccatttctgatcccaatatttagtaaacataca 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 583 ggattttccccccattaacatttaattccatttctgatcccaatatttattaaacataca 524
Query: 121 aagattccggaagttgctcagtctaagctggtgcttttccttttggttgatagataataa 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 523 aagattccggaagttgctcagtctaagctggtgcttttccttttgattgatagataataa 464
Query: 181 ttaggtaataattgttcactgcattctgttacgaggatgatcatgtaggtgatgtctctg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 463 ttaggtaataattgttcactgcattttgttacgaggatgatcatgtaggtgatgtctctg 404
Query: 241 tgatttcctgtg----tttctctattacagagctaacagacactgttagacacatagata 296
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 403 tgatttcctgtgggga---ctctattacagagctgacagacactgttagacacatagata 347
Query: 297 agaaagcctggtctccgaccctcgttatctaacaatgagttctgtgtacagcaggtaagc 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 346 agaaagcctggtctccgaccctcgttatctaacaatgagttccgtgtacagcaggtaagc 287
Query: 357 ccacattcagttttacctgggaagcagaaacttctcacttaccagtgattttcaggtaat 416
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 286 ccacattcagttttacctgggaagcagaaacttctc----accagtgattttcaggtaat 231
Query: 417 gttcccaggatgcagcccgcctcctgccgg 446
|||||||||||||||||| |||||||||||
Sbjct: 230 gttcccaggatgcagcccacctcctgccgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 845
Length adjustment: 10
Effective length of query: 438
Effective length of database: 835
Effective search space: 365730
Effective search space used: 365730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_g08.g1 MSMg01no431_g08.g1 CHROMAT_FILE:
MSMg01no431_g08.g1 PHD_FILE: MSMg01no431_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:41 2005
(408 letters)
>mm_chr1_180926349_180927156
Length = 808
Score = 760 bits (393), Expect = 0.0
Identities = 399/401 (99%)
Strand = Plus / Plus
Query: 8 aaaaaaaatgcagctctcagctagtatgggctatttcaaaacctaggaggctcctgggga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aaaaaaaatgcagctctcagctagtatgggctatttcaaaacctaggaggctcctgggga 267
Query: 68 ttctcagatccagctgtttgaagtgaatgcagcagcccccgggtcctttctttctgtgac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctcagatccagctgtttgaagtgaatgcagcagcccccgggtcctttctttctgtgac 327
Query: 128 ctgtggcttggggtcagtggctttagcaagcatagcctgaagtttagcttcctctgtgct 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgtggcttggggtcagtggctttagcaagcatagcctgaagtttagcttcctctgtgct 387
Query: 188 caccatagaggtgaaagcttcagtctagaagtccctctcctcccctttgagcgcagagtg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caccatagaggtgaaagcttcagtctagaagtccctctcctcccctttgagcgcagagtg 447
Query: 248 tctgttaagcaacacagtgaagagcaagtttatgtaagcgagcatattctgcattgggac 307
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctgggaagcaacacagtgaagagcaagtttatgtaagcgagcatattctgcattgggac 507
Query: 308 gtcaatccctcgagtggacgggccacataccgcacactgctcttcatgtactttgacccc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtcaatccctcgagtggacgggccacataccgcacactgctcttcatgtactttgacccc 567
Query: 368 agacagtgacagaggaggctctgtctgtcctgccctagatg 408
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agacagtgacagaggaggctctgtctgtcctgccctagatg 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
