Query= MSMg01no431_i11.b1 MSMg01no431_i11.b1 CHROMAT_FILE:
MSMg01no431_i11.b1 PHD_FILE: MSMg01no431_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:53 2005
(247 letters)
>mm_chr1_82046886_82047532
Length = 647
Score = 379 bits (196), Expect = e-110
Identities = 228/246 (92%), Gaps = 13/246 (5%)
Strand = Plus / Minus
Query: 1 aaacccctaa-aaaacaaagggacatgagagtgggaggaggtagttgcttgggtggatgc 59
|||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct: 490 aaacccctaacaaagcaaagggacatgagagtgggaggaggtagt------------tgc 443
Query: 60 ttggggaaggataactggggtaagagagaacggagttgtgaatgtggtcagaatgtaata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttggggaaggataactggggtaagagagaacggagttgtgaatgtggtcagaatgtaata 383
Query: 120 tgtacatgtatgaaattgtcacagaatggactactttaaaaataaaaatagtatcctgtt 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtacatgtgtgaaattgtcacagaatggactactttaaaaataaaaatagtatcctgtg 323
Query: 180 tttatgcacaaaagagaatacagctaattaaaaaaaaaagcaaggatgtctattaaattc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catatgcacaaaagagaatacagctaattaaaaaaaaaagcaaggatgtctattaaattc 263
Query: 240 aatcaa 245
||||||
Sbjct: 262 aatcaa 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no431_i11.g1 MSMg01no431_i11.g1 CHROMAT_FILE:
MSMg01no431_i11.g1 PHD_FILE: MSMg01no431_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:53 2005
(455 letters)
>mm_chr1_81917617_81918471
Length = 855
Score = 826 bits (427), Expect = 0.0
Identities = 448/455 (98%)
Strand = Plus / Plus
Query: 1 catttttaaaatgtaggccaaacctattacggagcttatccccatagaatattgattctc 60
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 201 catttttaaaatgtaggccaaacctatcatggagcttatccccatagaatattgattctc 260
Query: 61 tttcattcaacaggacaccagttgactgtagctcttcttccagtggtagggtcttgagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcattcaacaggacaccagttgactgtagctcttcttccagtggtagggtcttgagag 320
Query: 121 atttctcctatacacatccacactggcatgccaactggagttttcattgtgcaatcctgt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 321 atttctcctatacacatccacattggcatgccaactggagttttcattgtgcagtcctgt 380
Query: 181 ttaggagaccatatagttaagatttcataggtgcagctccctgttgtatataaaagacac 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggagaccatatagttacgatttcataggtgcagctccctgttgtatataaaagacac 440
Query: 241 tatatggttcccaatgccctggtcctctgtctcttccaaatttcactatgatccctaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatggttcccaatgccctggtcctctgtctcttccaaatttcactatgatccctaata 500
Query: 301 tataaatgtcgaaatctatcaactgcagattggcacattcaactgttctgtatactttta 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tataaatgtcgaaatctatcaactgcagataggcacattcaactgttctgtatactttta 560
Query: 361 tgctctacctgcctttgctctgggaagataccagccccctcccagcttcccttgaatcct 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctctacctgcctttgctctggaaagataccagccccctcccagcttcccttgaatcct 620
Query: 421 aggatagaagacacagacacacagtggttcaattt 455
|||||||||||||||||||||||||||||||||||
Sbjct: 621 aggatagaagacacagacacacagtggttcaattt 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
