BAC Information

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BAC

Clone NameMSMg01-431J18
Chromosome1 (Build37)
Map Location 101,980,478 - 101,980,851
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295
Downstream geneEG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431J18.T7 (MSMg01no431_j18.b1)MSMg01-431J18.TJ (MSMg01no431_j18.g1)
ACCAG523828AG523829
length782793
length of high quality
(start - end)
250 (60 - 309)375 (62 - 436)
definitionCHROMAT_FILE: MSMg01no431_j18.b1 PHD_FILE: MSMg01no431_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:00 2005CHROMAT_FILE: MSMg01no431_j18.g1 PHD_FILE: MSMg01no431_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAACGACTCCTATAGTTCGAGAATCCGCGGAATTCTTTGTTCA
TTCCTGAGACCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCACC
TTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGA
CGGCGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTG
TCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTT
TTCCCCTGTGTTTTTATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAA
GTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTG
ACCTCCACACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATGA
TAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCCTTCTTCC
ATTGGATGGTTTTAGCTCCCTTGTCTAAAATCTAGTGAACCTATGGGGGT
TGTGTTCCTTTCTCGGCCTTCTAAACTACCCCATTGGCCCACATTGTCGC
CCCCAAAACCCTATCCTGTTGTTTTTTCCCCACGGGTCTTGCCATTTTTT
TTCTTCTGCCCTTTTTGTTTTCCTTAATGCCCCTCATCTCTCTTTATAAC
TCTTCCCTTTTTTAGTTCTTTTTCTTCCCGCCTTTTTTTTTTCTATTCCC
CCCCCCTTCTTTTTTTGCATCTCCCTTATCCT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGGGAAAGGGAACTTCAGCTGAGCATGGGTTTGCAGAG
AATACCACCCAGCTAGCCTGAGAAATTTGGGATTGCAGAGTAGGTTTGGC
AGCTATCAGCCTCGAAGGGGAGTAGGAGTGGCAGATGACTGGGAATTTGA
GCAATTCCACAGCAAGCAGGATAAAAAAAATCTTACAAGCAGAAAAGTAG
GATTGAGTTTAGATTGATACTATGCTAATTCACACAAACAAAATTCATTT
TCATAGTTAATATTTTGTCCCTAGTACTATCAGAGAGTTGTAGTTTATAG
AAACAAATGATAAAGAAGCAGAAAAATCTCAGCCCTTATATACTTAAATT
ACATGTCATGCATGGAATGATGAGGTAGTTTTGAATATAGGTAAATTTTT
TTCTTTCTTCACCCTCTTCTTATCCTATAATGTTTTATATTTTCACTTCT
TTCTCCTTCTTCCTCATGGCTTCTTACTTTTTCCTAAGTTTCCATTCTAC
TATCTTTTTCCTCTGTTCTTTTCTCTTGCTTTACCACTCTTTCCCCCTCT
TTTTCTTTTTTTTCCCTTTACTCCTCCTTCTCCTTCCCTCCCCTGGGCCC
TTTTTCCTCTTCTTTTTCCTTTTGCTCTTTTCACCCTTTTCTCCCCTTTT
TCCTTTTTTCCCACCCCCCCCTTTTTCTTTTTTTTATTCATCTTTCATTC
TGTCGCTTCTTATTCTCTGTCTTATCCGCCTTTTTCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_j18.g1 MSMg01no431_j18.g1 CHROMAT_FILE:
MSMg01no431_j18.g1 PHD_FILE: MSMg01no431_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:00 2005
         (375 letters)



>mm_chr1_101980278_101981051
          Length = 774

 Score =  663 bits (343), Expect = 0.0
 Identities = 367/377 (97%), Gaps = 5/377 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggaaagggaacttcagctgagcatgggtttgcagagaataccacccagctagcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 574 cagggaaagggaacttcagctgagcatgggtttgcagagaataccacccagctagcctgg 515

                                                                       
Query: 61  gaaatttgggattgcagagtaggtttggcagctatcagcctcgaaggggagtaggagtgg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 514 gaaatttgggattgcagagtaggtttggcagctatcagcctagaaggggagtaggagtgg 455

                                                                       
Query: 121 cagatgactgggaatttgagcaattccacagcaagcaggataaaaaaaatcttacaagca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 454 cagatgactgggaatttgagcaattccacagcaagcaggaaaaaaaaaatcttacaagca 395

                                                                       
Query: 181 gaaaagtaggattgagtttagattgatactatgctaattcacacaaacaaaattcatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaaaagtaggattgagtttagattgatactatgctaattcacacaaacaaaattcatttt 335

                                                                       
Query: 241 catagtta--atattttgtccctagtactatcagagagttgtagtttatagaaacaaatg 298
           ||||||||  | |   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 catagttaagaaa---tgtccctagtactatcagagagttgtagtttatagaaacaaatg 278

                                                                       
Query: 299 ataaagaagcagaaaaatctcagcccttatatacttaaattacatgtcatgcatggaatg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 277 ataaagaagcagaaaaatctcagcccttatatacttaaattacatgtcatgtatggaatg 218

                            
Query: 359 atgaggtagttttgaat 375
           |||||||||||||||||
Sbjct: 217 atgaggtagttttgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 774
Length adjustment: 9
Effective length of query: 366
Effective length of database: 765
Effective search space:   279990
Effective search space used:   279990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)