BAC Information

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BAC

Clone NameMSMg01-431N04
Chromosome1 (Build37)
Map Location 112,135,236 - 112,135,691
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N04.T7 (MSMg01no431_n04.b1)MSMg01-431N04.TJ (MSMg01no431_n04.g1)
ACCAG523992AG523993
length7491,137
length of high quality
(start - end)
473 (66 - 538)---
definitionCHROMAT_FILE: MSMg01no431_n04.b1 PHD_FILE: MSMg01no431_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:18 2005CHROMAT_FILE: MSMg01no431_n04.g1 PHD_FILE: MSMg01no431_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCTG
ATCCTTTCCCTAATACAAAATGACAAGAATATTTAAGTCTCCTGGGTAAG
TAGTACAAATATAAGATTTTTGTCAAATTAGCATTAATTTATCTTGGTTC
TCAGGAGCAATAAAATAAAAATGTACACAATGGCAGAACAACTACAGCAG
AGCAAGTGTCAGGATTCAACTGCACAGCTGAAAACACAGATTCTGAAGGA
AACAGAGTAATAGGAGCTAAAATTGGCACATTTTTGAACTCCACCCATTT
ACTGCCTGTGCCTACCTCTGGAGCAAATCATCAGCTTGTCTGCTCCTCTG
AAGACCCCACAGTCTGAAGGCCTCTCATGGGATCTGCTAAACAACATGCA
TGTAAGGGGACTTCTGGAACAGCCATAGCAACTGGTAACCCAAAGGAATC
CAGCACACTGGAGACCCATTCCTACCTTATCCTCACTTGAATTCCACTGC
CTTTCTGGTCAACAATTTCCACCAGGGCAGATTATGGTGAATTGCAGGCT
GGTTTCCAGTTGATCTGAGGTCCGACCCCTGAAGTCATTATTCTCCTTTG
TGACATGCTAAGTGTTCCCTTATGCTCCTGTCACCTTGTTCCCTTGTTTA
TAACATACCCTTCTCTTCTCCCCTAGATTAAAATGTTCTTAATTCCCGCA
TGTCATTGTCTCTATCTCCCCTACCCTCTTTTTTAATTTCCCCTTCCAG
AGGGAGCTGTGGTTCAATAAGGTTATAGGCGCTCAATAAAACGGACAAAT
GCGCGCGGACACCAGAGGAGACAACCCACTCCGGATGCTACTCCCATCTT
GAGGGGACGGCGACGAATGTTTCATAGCGAGAACCTCGCTACGTTGTTAC
TTCTCTCAGAGACGGCACGTATCTACGNTTATTTATATCACAGCGACGGC
GGGCGTACTCCGCCATATTCAGCAGTCATCCATACTGTAGTGACACTTAA
TACACTTTACGACTGACTTTATCTCCAGTTGCTCGCTAGAACTATTGATT
TGTGGACACCTCCACTAACACCACTCCACAGCAAATTCATTGGCACACCA
CTACCCCCCCTCCACCCTACCAGTATGCTGCAAGATTGTGGTCGGCACCT
TTTCCTACCCACCCTCACTCTTACTCACACCACGTGTCTACCCTGTGCGA
CGTACCATCGCTGCTCGCACTCGCCTATATCCGCAGACCTCCGCCTAACC
ACACTTATGTACATACACAACTGACCCGAGCGATCAGAGTGAGTATTCCA
CGTCAGATACTGTCACCACACATATTATAACGTTAACAACTGCATCACAC
ACCCCGGACAGGTAAAATTACAACTCTGTATCGTCCGACTACGCCGCGTA
AACCGTTCCGCTCGTATCATACACACCACTCGGATAGCGCGCGGACGAAT
ATTTATTGATAGTAACGACGCCATATCCATACTAGATGGCGCGGCCAGCA
CCGACAATCGCACGCGGGCGTATACATGGTACCCACATACTGATCAGCCT
CTGTCTCCACATTAGTGTGTTTGTGGCCGCTCATGTCGTGACACAAATTT
GAACCTTGGCAAGCGGAAACTATCTCTCCCGTCTACGATGTTTATTTCAG
TGCCCCAATTTAACCGCTCCAGTCGACACCAGTCTCGCTACCCCCATCAT
GCTCGCTCGTCTGGTTCCACCTCGTTTACTCGAATCCCCTACCTTATATT
TCCTTTATATCTCCACCTTAATACGTATTTTTGACCACCCTCCCCGCCAT
ATCTACACTGTTCACCAATACCGGCACCACTATCGCGCGGCATCTTTTAA
AGACCTATTACTATGCAAACACAATTTACCCTAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n04.b1 MSMg01no431_n04.b1 CHROMAT_FILE:
MSMg01no431_n04.b1 PHD_FILE: MSMg01no431_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:18 2005
         (473 letters)



>mm_chr1_112135236_112136108
          Length = 873

 Score =  859 bits (444), Expect = 0.0
 Identities = 453/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaatgacaagaatatttaagtctcctgggtaagtagtacaaatataagatttttgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caaaatgacaagaatatttaagtctcctgggtaagtagtacaaatataagatttttgtca 397

                                                                       
Query: 61  aattagcattaatttatcttggttctcaggagcaataaaataaaaatgtacacaatggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aattagcattaatttatcttggttctcaggagcaataaaataaaaatgtacacaatggca 337

                                                                       
Query: 121 gaacaactacagcagagcaagtgtcaggattcaactgcacagctgaaaacacagattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaacaactacagcagagcaagtgtcaggattcaactgcacagctgaaaacacagattctg 277

                                                                       
Query: 181 aaggaaacagagtaataggagctaaaattggcacatttttgaactccacccatttactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaggaaacagagtaataggagctaaaattggcacatttttgaactccacccatttactgc 217

                                                                       
Query: 241 ctgtgcctacctctggagcaaatcatcagcttgtctgctcctctgaagaccccacagtct 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctgtgcctaccactggagcaaatcatcagcttgtctgctcctctgaagaccccacagtct 157

                                                                       
Query: 301 gaaggcctctcatgggatctgctaaacaacatgcatgtaaggggacttctggaacagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaaggcctctcatgggatctgctaaacaacatgcatgtaaggggacttctggaacagcca 97

                                                                       
Query: 361 tagcaactggtaacccaaaggaatccagcacactggagacccattcctaccttatcctca 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tagcaactgggaacccaaaggaatccagcacactggagacccattcctaccttatcctca 37

                                               
Query: 421 cttgaattccactgcctttctggtcaacaatttcca 456
           |||||||||||||||||||||||||| |||||||||
Sbjct: 36  cttgaattccactgcctttctggtcagcaatttcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)