BAC Information

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BAC

Clone NameMSMg01-432C07
Chromosome1 (Build37)
Map Location 3,448,588 - 3,449,074
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432C07.T7 (MSMg01no432_c07.b1)MSMg01-432C07.TJ (MSMg01no432_c07.g1)
ACCAG524234AG524235
length779781
length of high quality
(start - end)		492 (39 - 530)479 (70 - 548)
definitionCHROMAT_FILE: MSMg01no432_c07.b1 PHD_FILE: MSMg01no432_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:45 2005CHROMAT_FILE: MSMg01no432_c07.g1 PHD_FILE: MSMg01no432_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCT
CTATGGCATCACCACATTATTATAGGGTTTTTGAGGGCAAGGGTTCTCCT
GTTCCAATCTCTGTTATGTATTAGACATATACTGAGTTTTAACAAATGCA
TTTTGTGGTTATAGCACCATGGAAATCTATCTTGCCTTAAGCAAACATTT
TATTCTTCCTGAAAGTTGAATGTGAATGGTAGTGCAATATTGGACTTGTG
TTTAAATTGTAGTCCTATATTGCTCATTCACTAGATCATATGTTCTCTCT
TTGAATTCACAGATATTCCCAAGCACCCAGTGACTCTTTCTTTTGTCGCC
TTGATTGGGATATTGCAGCAGTCTTGTCTCTAATCTGTGACAATTCCAAA
CTCCAATCCAGGAAATCAAGAGCTCTTTGAAACACTGATCTATAATGTCC
TTTAATACCGAAGATGCTTCACAGGGCATTTTCTGTTGCTTACTTTACAG
ATGAAGAAATTGATGGCCTAGACAGTGAAGACCTGTTCAGGGTCATACAA
TTGAAAGTCTAAGAATCAATAATCCAGAATTCTGTTTTTTTTCTTAATTT
TTCGAAACAGGGTTTCTCTGTGTTCCCCTGGCTGTTCTAGAAATCACTCT
GTAGAACAAGGTGGCCTCGAATATCAGAAATCCGCCTGTGTCTGTCTCCC
CAAGGGTTGGGATAAAAGGTATGTGCCCCATGTCCCGCTTTCTCCCTTTT
TAACCAACCAACCTACTAATTCATCCACG

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATTGTGCAAATGAACCTCATTTTCTGTATC
CATTCTTCTGTCCTGGGACATCTGGGTTGGTTCCAGCTTCTGGCTATCAC
AAATAAGGCCACTATGAACATAGTGGAACAAGTGCCCCTGTCGCACGGTG
GTGCATCTTTTGGGTATATTCCCAAGAGTGGTATAGCTGGGTCTTCAGGT
AGATCTATTTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAAGTTGG
TCATACCAGTTTGCAATCCCACCAGCAATGGAGGAGTGTTCTTCTTTCTC
CACATCCTCTCCAACATGTGTTGTCACCTGAGGTTTTAATCTTAGCAACT
CTGATTGGTGTAAAGCAGAATCTCAGGGTCATTTTGATTTTCATTTCTCT
GATCACTACGGTCTTTGAACATTTCCTTAGGTGCTTTTAGACCATTCAAG
ATTTTTCAGGTGTTGAATTCTCAGTTTAGTTCTATACCCCATTTTTTGAT
TGGGTTGTTTGGGTTCTGGTCNTCCTCTCCCTTGCGCTCTTCTCTTTTTT
TTCGTGGCTGTCACATCCCCCTCCTTTCTAAAACCTCCAATTTTTATAAT
CATTCTATCTAACCCGCTCTTTTATTTTCTGGCCTTTCCTTTTTTCATTA
CTTATACTACAGTTATACTACTCTATCCTTTTTTCTATTCCTTTTAGTGT
CCATTTCCTCCTTCCTTCTGGTTTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_c07.b1 MSMg01no432_c07.b1 CHROMAT_FILE:
MSMg01no432_c07.b1 PHD_FILE: MSMg01no432_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:45 2005
         (492 letters)



>mm_chr1_3448383_3449274
          Length = 892

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctatggcatcaccacattattatagggtttttgagggcaagggttctcctgtt 65
           ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctatggcaacagtacattattatagggtttttgagggcaagggttctcctgtt 265

                                                                       
Query: 66  ccaatctctgttatgtattagacatatactgagttttaacaaatgcattttgtggttata 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaatctctgttatgtattagacatatactgagttttaacaaatgcattttgtggttata 325

                                                                       
Query: 126 gcaccatggaaatctatcttgccttaagcaaacattttattcttcctgaaagttgaatgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcaccatggaaatctatcttgccttaagcaaacattttattcttcctgaaagttgaatgt 385

                                                                       
Query: 186 gaatggtagtgcaatattggacttgtgtttaaattgtagtcctatattgctcattcacta 245
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaatgttagtgcaatattggacttgtgtttaaattgtagtcctatattgctcattcacta 445

                                                                       
Query: 246 gatcatatgttctctctttgaattcacagatattcccaagcacccagtgactctttcttt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatcatatgttctctctttgaattcacagatattcccaagcacccagtgactctttcttt 505

                                                                       
Query: 306 tgtcgccttgattgggatattgcagcagtcttgtctctaatctgtgacaattccaaactc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtcgccttgattgggatattgcagcagtcttgtctctaatctgtgacaattccaaactc 565

                                                                       
Query: 366 caatccaggaaatcaagagctctttgaaacactgatctataatgtcctttaataccgaag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caatccaggaaatcaagagctctttgaaacactgatctataatgtcctttaataccgaag 625

                                                                       
Query: 426 atgcttcacagggcattttctgttgcttactttacagatgaagaaattgatggcctagac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atgcttcacagggcattttctgttgcttactttacagatgaagaaattgatggcctagac 685

                  
Query: 486 agtgaag 492
           |||||||
Sbjct: 686 agtgaag 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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