BAC Information

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BAC

Clone NameMSMg01-432C17
Chromosome1 (Build37)
Map Location 172,361,074 - 172,467,825
singlet/doubletdoublet
Overlap geneNos1ap
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432C17.T7 (MSMg01no432_c17.b1)MSMg01-432C17.TJ (MSMg01no432_c17.g1)
ACCAG524254AG524255
length777782
length of high quality
(start - end)		450 (44 - 493)206 (77 - 282)
definitionCHROMAT_FILE: MSMg01no432_c17.b1 PHD_FILE: MSMg01no432_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:47 2005CHROMAT_FILE: MSMg01no432_c17.g1 PHD_FILE: MSMg01no432_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,467,379 - 172,467,825)(172,361,074 - 172,361,278)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGACCACTTTCGCCATCCCCAGAGCTGTTTCTTTGTACTTTGTCTT
CTGTACTTCTCCAACACTCTTGATTTGCCATCCTCCTTCAGGGCATTGGG
TTAGCCTGTGCTCTGGAAGCCTCCTGTTATCAACTGGTCTGAATGAACAC
CCATCACCATGGCTTATAGGAGTGCTGTGCATGATCAGCACAATGTGGTG
TGGCTACTGTGTTCTTTGCGTTAATGCTGAGGTGGTCTAGGAACTCCAGG
ACCCATCGAAGTAAGCCACAGGGCCCTGCTTCCTCCCACCCATCCTCACT
TTGTACCCCATCCATCTCTAAGCTCTCCTGTTTCAGCATTCATTTGCTTG
CTCAGCATTTTGCGATCCAGCTGCCTTGGCTACTTAAGTCTCTCCAAGTC
CACACTTGTGTACAGCTGCATATGCACTTGAGTGTTGCTGTGTTGTCGTA
TGCGTAGAATGTTATGGTTGCTTATATGTGGCTCCATCTTGCCTATTTAT
TTGGGGAAGGCCAGATACAGAAGCCCCCTTAACTGAAAGAAGAAACACAG
TTCTCCTTGGTTTGGGGGAAATGGGGAAAACCCACTGATCTGGGAAGAAA
ATAAATGTGGAAGGGTGGGCGGCTTTCCCTTCTTATTCTTTTTTTTTCTT
TTCCCTCCATTCTCTATTCTTTTTTTTCCCTACCCTTCTTACGTTCATGT
CTTAGCCTGTCTTTTTTTTTCATCAAT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTTCTGCTTTTTCCTGCCTC
CTCCTTCCCAAAGACCAAGTAAAAGAAAATCGGTGAGGTGTGCTCAGAGC
TCATAGCTACACCCGGAAGATTCAAGCACTTTTCTCAAAATTTAAGTCAT
TTCTCTACTGAGTCCCATCAGTTGTTACTCTCTTTGAATCAGAGCTGAGA
TGGTGTATGTGTGTGTGTATGTATGTGTGAGNNNNTNNNNNNNNNNNTGN
NTNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTNNNNNNNNNNNNTNNN
TNTTNNTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTNNTTTTTTTTTTTT
TTTTTTTTTTTTTCTNNCCNTTTTTTTTTTTTTTTTTTNTTTNTTTTTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTTTTTTTTTT
NTTTTTTTTNTNTTTNTTTTTTTCTTNNTTNNTTTTTTNTTTTTTTTTTN
TTTTNNTTTTTTTTTTTNNTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTNTTTNTTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTCCCTTCTCTCC
CCTTTCCTTCTTTCTCTCCCTTCCCTTTTCCTCTTTCCTTTTTTTTCCTC
TTTTTCTCCTCCTCCTCCTTTTCTCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_c17.b1 MSMg01no432_c17.b1 CHROMAT_FILE:
MSMg01no432_c17.b1 PHD_FILE: MSMg01no432_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:47 2005
         (450 letters)



>mm_chr1_172467176_172468025
          Length = 850

 Score =  849 bits (439), Expect = 0.0
 Identities = 445/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggaccactttcgccatccccagagctgtttctttgtactttgtcttctgtac 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggaattctggaccactctagccatccccagagctgtttctttgtactttgtcttctgtac 591

                                                                       
Query: 64  ttctccaacactcttgatttgccatcctccttcagggcattgggttagcctgtgctctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttctccaacactcttgatttgccatcctccttcagggcattgggttagcctgtgctctgg 531

                                                                       
Query: 124 aagcctcctgttatcaactggtctgaatgaacacccatcaccatggcttataggagtgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aagcctcctgttatcaactggtctgaatgaacacccatcaccatggcttataggagtgct 471

                                                                       
Query: 184 gtgcatgatcagcacaatgtggtgtggctactgtgttctttgcgttaatgctgaggtggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtgcatgatcagcacaatgtggtgtggctactgtgttctttgcgttaatgctgaggtggt 411

                                                                       
Query: 244 ctaggaactccaggacccatcgaagtaagccacagggccctgcttcctcccacccatcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctaggaactccaggacccatcgaagtaagccacagggccctgcttcctcccacccatcct 351

                                                                       
Query: 304 cactttgtaccccatccatctctaagctctcctgtttcagcattcatttgcttgctcagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cactttgtaccccatccatctctaagctctcctgtttcagcattcatttgcttgctcagc 291

                                                                       
Query: 364 attttgcgatccagctgccttggctacttaagtctctccaagtccacacttgtgtacagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 attttgcgatccagctgccttggctacttaagtctctccaagtccacacttgtgtacagc 231

                                      
Query: 424 tgcatatgcacttgagtgttgctgtgt 450
           |||||||||||||||||||||||||||
Sbjct: 230 tgcatatgcacttgagtgttgctgtgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_c17.g1 MSMg01no432_c17.g1 CHROMAT_FILE:
MSMg01no432_c17.g1 PHD_FILE: MSMg01no432_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:47 2005
         (206 letters)



>mm_chr1_172360874_172361479
          Length = 606

 Score =  397 bits (205), Expect = e-115
 Identities = 205/205 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttttctgctttttcctgcctcctccttcccaaagaccaagtaaaagaaaatcggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttttctgctttttcctgcctcctccttcccaaagaccaagtaaaagaaaatcggtga 260

                                                                       
Query: 61  ggtgtgctcagagctcatagctacacccggaagattcaagcacttttctcaaaatttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtgctcagagctcatagctacacccggaagattcaagcacttttctcaaaatttaag 320

                                                                       
Query: 121 tcatttctctactgagtcccatcagttgttactctctttgaatcagagctgagatggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatttctctactgagtcccatcagttgttactctctttgaatcagagctgagatggtgt 380

                                    
Query: 181 atgtgtgtgtgtatgtatgtgtgag 205
           |||||||||||||||||||||||||
Sbjct: 381 atgtgtgtgtgtatgtatgtgtgag 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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