BAC Information

Click to search

BAC

Clone NameMSMg01-432H20
Chromosome1 (Build37)
Map Location 73,663,484 - 73,836,120
singlet/doubletdoublet
Overlap genenone
Upstream geneSmarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432H20.T7 (MSMg01no432_h20.b1)MSMg01-432H20.TJ (MSMg01no432_h20.g1)
ACCAG524496AG524497
length783780
length of high quality
(start - end)		410 (45 - 454)376 (78 - 453)
definitionCHROMAT_FILE: MSMg01no432_h20.b1 PHD_FILE: MSMg01no432_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:14 2005CHROMAT_FILE: MSMg01no432_h20.g1 PHD_FILE: MSMg01no432_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,663,484 - 73,663,889)(73,835,745 - 73,836,120)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAATGTTTCCTTGCATTTGTAAAGCGCCCGCTCGTGGTTCATGT
TCCTTCCTGCAAGGTTATGCTCCTCTGGTCTTTTACTTTAAGAAGTTTTG
CATAGTTTGCTTTGCTCTCTGTATTGCTCAATTACACTTCATTCTTCCTA
TCCAGGGCTCGAGAGTTTTGATTCTTTCTTAGTTCTGTTCTTTTTTGCTG
TTTCTTAGCACAGAATTTTCTCCTCTTACCTTTGTTAGTTCTTTTCCTGT
GTTCTCTTCTTCTGGTTCCCTTTATAATTCTAGATCTTTGAATTGTGTGC
TAAGGTTGTTGAGCTGTTTCTTATTGGGTTTGGTTTCTCCTCAGATCACT
GCTGTAATTATACACCAGAAATTCTGGTGGGAACCTTTTCATTCTGTCAT
TGCCGTAAGAAAACCTGCAATTTCTGCTCATGCTTCCTTGCAAAGGGTGG
TAGACCAAGAAAGGCTGCATTTGGGAAATTTCAGGGTGGGAGAATTAAAA
ATAATTTTTTTCTCCCTAAAATAATTTCCAGGGATTTACAAGTTTTTTTG
CCCCCAAAAAATTTACGTGGGGACTTTAAATTCCAAGGGGAATAAACTCC
CGCGTGGAAGCCTCTTATAGGATTTTAAGGTTGTGAGCACCGCCACCATA
ATCAAGAGTGGGCCTGATAGAAATCAATGTTGGGCTTCCGTGTAGTTTCA
TTCCGCGCTGTATTCCTTAATGTGATCAAATTA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTAGATGATGCTAGTCACAT
GGGGCTTGAAAGCAGACACAATTAATCTTTAATGATAAATAGTAGAAGTA
TGGTTATGTCAGAAGACAGGGCATACTATTGACAGGAAAGGAACATATGT
GTGGATTGTCCCAGTTAGCTATTTTTTGTGATAAATTATCTCTAAAATCA
GCAACAAAACCAAAATCTAGCTCGTTCAGTCCCTCAGTTTTGTGGAACTT
GATTGATTTTTTTCATTTTCCATGTGGTGCTGATGGAGAGTCTGGTCCTG
AGGGTCCAAGATGGCTTTCCTCAGGTCTAAGCTCTTGGTAGGCCGTGCTA
AAATGCTGGACTGGAGAACCTACATGTAGCCTTCGAAATATGGAGACCTC
AGTGGGAAGTAAGACTGAGCAACTTATATGCCCTGAGTGTTGCATAGACT
CAGACAGAAATTGCACAGCCTTTGCTAGCCTAACCTTTACACCTCCCCCG
CTGCCATCTGGGCAGCCCAGGAGCCCATCCTGTTGAAATTCATGGAATAA
GGGGTCCCCCACCTTCCCCTATGATTGCGCCGAAACTTCTCTCCCCCTCT
GGCGCTTTTTTTTCGTGGCTTTTCTACATCCCTTGCTTATTTTACCCTGG
TGTTTCGTGCCAATCACCTTTCTTCTCTTTCACTTTACTTTTTTTTATCT
TTTTTTCCCCTTCTCTTCTTCTTGCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_h20.b1 MSMg01no432_h20.b1 CHROMAT_FILE:
MSMg01no432_h20.b1 PHD_FILE: MSMg01no432_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:14 2005
         (410 letters)



>mm_chr1_73663280_73664089
          Length = 810

 Score =  754 bits (390), Expect = 0.0
 Identities = 402/406 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataatgtttccttgcatttgtaaagcgcccgctcgtggttcatgttccttcct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataatgtttgcttgcatttgtaaagcgcccgctcgtggttcatgttccttcct 264

                                                                       
Query: 65  gcaaggttatgctcctctggtcttttactttaagaagttttgcatagtttgctttgctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaaggttatgctcctctggtcttttactttaagaagttttgcatagtttgctttgctct 324

                                                                       
Query: 125 ctgtattgctcaattacacttcattcttcctatccagggctcgagagttttgattctttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtattgctcaattacacttcattcttcctatccagggctcgagagttttgattctttc 384

                                                                       
Query: 185 ttagttctgttcttttttgctgtttcttagcacagaattttctcctcttacctttgttag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagttctgttcttttttgctgtttcttagcacagaattttctcctcttacctttgttag 444

                                                                       
Query: 245 ttcttttcctgtgttctcttcttctggttccctttataattctagatctttgaattgtgt 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 445 ttcttttcctgtgttctcttcttctggttccctttataatcctagatctttgaattgtga 504

                                                                       
Query: 305 gctaaggttgttgagctgtttcttattgggtttggtttctcctcagatcactgctgtaat 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctaaggttgttgagctatttcttattgggtttggtttctcctcagatcactgctgtaat 564

                                                         
Query: 365 tatacaccagaaattctggtgggaaccttttcattctgtcattgcc 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatacaccagaaattctggtgggaaccttttcattctgtcattgcc 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_h20.g1 MSMg01no432_h20.g1 CHROMAT_FILE:
MSMg01no432_h20.g1 PHD_FILE: MSMg01no432_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:14 2005
         (376 letters)



>mm_chr1_73835671_73836446
          Length = 776

 Score =  712 bits (368), Expect = 0.0
 Identities = 374/376 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttagatgatgctagtcacatggggcttgaaagcagacacaattaatctttaatgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttgttagatgatgctagtcacatggggcttgaaagcagacacaattaatctttaatgata 391

                                                                       
Query: 61  aatagtagaagtatggttatgtcagaagacagggcatactattgacaggaaaggaacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aatagtagaagtatggttatgtcagaagacagggcatactattgacaggaaaggaacata 331

                                                                       
Query: 121 tgtgtggattgtcccagttagctattttttgtgataaattatctctaaaatcagcaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtgtggattgtcccagttagctattttttgtgataaattatctctaaaatcagcaacaa 271

                                                                       
Query: 181 aaccaaaatctagctcgttcagtccctcagttttgtggaacttgattgatttttttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaccaaaatctagctcgttcagtccctcagttttgtggaacttgattgatttttttcatt 211

                                                                       
Query: 241 ttccatgtggtgctgatggagagtctggtcctgagggtccaagatggctttcctcaggtc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttccatgtggagctgatggagagtctggtcctgagggtccaagatggctttcctcaggtc 151

                                                                       
Query: 301 taagctcttggtaggccgtgctaaaatgctggactggagaacctacatgtagccttcgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 taagctcttggtaggccgtgctaaaatgctggactggagaacctacatgtagccttcgaa 91

                           
Query: 361 atatggagacctcagt 376
           ||| ||||||||||||
Sbjct: 90  atacggagacctcagt 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |