BAC Information

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BAC

Clone NameMSMg01-432J02
Chromosome1 (Build37)
Map Location 174,951,177 - 174,951,550
singlet/doubletsinglet
Overlap genenone
Upstream geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
Downstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432J02.T7 (MSMg01no432_j02.b1)MSMg01-432J02.TJ (MSMg01no432_j02.g1)
ACCAG524555AG524556
length803777
length of high quality
(start - end)		226 (40 - 265)374 (74 - 447)
definitionCHROMAT_FILE: MSMg01no432_j02.b1 PHD_FILE: MSMg01no432_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:20 2005CHROMAT_FILE: MSMg01no432_j02.g1 PHD_FILE: MSMg01no432_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGATCTTTCCCCACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGC
TTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGT
TTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGC
ATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTG
TTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATAT
TCGCATAATAGAAATTGGTCTGAATTCGTCTATCTTTGTCGGCTCTTTCT
GTGGTTTAGGTATCAGAGTAATAGTGGCTTCTTAAAATGAGTTGCTTAGA
GTACCTTCTACTTCTATTTTGTGAAATTGTTTGTGTTCAATTGTAATTAG
ATCTTCTTTGATTGCCTGCTACACCTCTGCTCTATCTCATCTTGTTTCCG
TCCTTTCCTTGTTCTGTTTTCCATTTATATCTGCCTCTCTTTCTTCTTCC
TTTTTTTTATTGTTCTCCATGCTTCTCTCTTTTTCCGCCTTTTCCTTATG
CCCTCTGCTACCTGTTCCATATATTTTTTTATTTCTCTCTCTTCTTTCTC
TCTTTTCCTTTCCTTTTTATTTCTTTTTTCTTTCTCACCTCTCCACCCCT
CTCTTTTCTTCATTCCTTATCTTTCTCTACACTTATCATTACTTCTTTCT
ATTTTTATTTTCTTCTCATCTATTTTCTTCTTAATTCTTTCTTTCTCTAT
TCT

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCCCAGTATCCACTTCATCCTTCCAA
TTTGTCTTTCTGGAGGACAGAGAAAGGAAAGCTAAAATCTATACCTCCTA
GAGTTCCTTAATACTAAAGCTCTTTGTGTGAGTTAGGCTCAACCAATCAA
ACACATATAGATGAGATTTTTGAGGGTGGAAATGAAACAGAGACTCTGTA
CCAATTTTGTCATCTCTATTTTTCAAGTATGTGGGCAGATTTTCAGTAAT
GGTATTAAATGGGGTGCCCACCACTTCGTCTCCATCTGCACATGTTACCA
GCAGGGTGTTGGGCATCAGTTGCTATCACCTAGTTTCTACCTGTATATGT
TAGAAGCAGGTGGTGAGTATCTGTGGTGGTTTGAATAGAAATGGCCACCA
TAGGCTCATATATTTGAATGCGTGGTCATAATGGAGTGGAGCTACTTTAC
TAGGATTAGGATATATGATCTTGATGCTGCATGTGTCGCCGCTGTCTCAT
CAATTTGTGTCCCTGTCTATATTTTTTTTTTAAACACAATGTTTTTTCTT
GTAGTATTTATTTCTTCTTTTTGTCTCTCTACTAATATTTCTTATTTTCT
CCCTTATCTCTTCATCTTATTTCTAACTTATAACACCTGCCCTTATACTT
TATTTGTTTCAAATCACTGTCTAATGGCCCGCTGANTTTCTTTTACTCTT
ACCACCCTTATTTGTCTCTTCCATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_j02.g1 MSMg01no432_j02.g1 CHROMAT_FILE:
MSMg01no432_j02.g1 PHD_FILE: MSMg01no432_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:20 2005
         (374 letters)



>mm_chr1_174950977_174951750
          Length = 774

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcccagtatccacttcatccttccaatttgtctttctggaggacagagaaaggaaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgcccagtatccacttcatccttccaatttgtctttctggaggacagagaaaggaaagct 515

                                                                       
Query: 61  aaaatctatacctcctagagttccttaatactaaagctctttgtgtgagttaggctcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaaatctatacctcctagagttccttaatactaaagctctttgtgtgagttaggctcaac 455

                                                                       
Query: 121 caatcaaacacatatagatgagatttttgagggtggaaatgaaacagagactctgtacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caatcaaacacatatagatgagatttttgagggtggaaatgaaacagagactctgtacca 395

                                                                       
Query: 181 attttgtcatctctatttttcaagtatgtgggcagattttcagtaatggtattaaatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attttgtcatctctatttttcaagtatgtgggcagattttcagtaatggtattaaatggg 335

                                                                       
Query: 241 gtgcccaccacttcgtctccatctgcacatgttaccagcagggtgttgggcatcagttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtgcccaccacttcgtctccatctgcacatgttaccagcagggtgttgggcatcagttgc 275

                                                                       
Query: 301 tatcacctagtttctacctgtatatgttagaagcaggtggtgagtatctgtggtggtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatcacctagtttctacctgtatatgttagaagcaggtggtgagtatctgtggtggtttg 215

                         
Query: 361 aatagaaatggcca 374
           ||||||||||||||
Sbjct: 214 aatagaaatggcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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