BAC Information

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BAC

Clone NameMSMg01-432J04
Chromosome1 (Build37)
Map Location 37,982,373 - 37,982,624
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776
Downstream gene2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3, Lonrf2, Chst10, EG625775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432J04.T7 (MSMg01no432_j04.b1)MSMg01-432J04.TJ (MSMg01no432_j04.g1)
ACCAG524559AG524560
length810796
length of high quality
(start - end)
468 (38 - 505)254 (74 - 327)
definitionCHROMAT_FILE: MSMg01no432_j04.b1 PHD_FILE: MSMg01no432_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:20 2005CHROMAT_FILE: MSMg01no432_j04.g1 PHD_FILE: MSMg01no432_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCAT
AGCCACTATGCCTCAAGATCTCCATGTTAAGATCCAGGTCAGAAACTTCT
ATCTCCCAGCCTCCAGATTAGGATCACTGGTGAGCCTTCTAATTCTGGAT
TGTTGTTTATTCCAGATATAGTCAAGTTGACAACCAGGAATAGCCGTTAC
ACCTGGCAAGAAGCAAATAAAAAAAAGAAGAGTTTACTTTGGCCCATCAC
AGTGGAAACAGCAAGGTGGCAGGAGCTTGAAGCAGCCAGTCATGTAGGAC
TCGCAGGAAGCAGAAAGAAATGAACGATAGGACTCATCTGGCTTTATCCT
CCTTCCTTTTAAAATTCAGCCCAAGTCCCATCCCAAGCCAACAGTTGGGG
TAGGTTTTCCCTGTTCAGTTAGACTTCTCTGGGAATATCCTCAGAGACAG
GCCCAGAGACGGTTCTCCCAGGCGATTCCAAATGCAGGCTAGTTAATAAT
CACAATTTATAAGGAAGAAACATACGAGGAAGACTGACTACCTGGTGAAA
TCCGGGTTGAGTACATGTTTATTTTCTATCCTTTCCCTAAAACCTAAAAA
TTACCTATGTAAATTTTTTTTTTTTGGTTTCGATTTTGTCTGCTTGATTG
CCTTTTATAGATAAGCTTATCTTTTTGTCCACCTTTTCCCCCTGCCCCGG
CCATATTTTTTTGTCTACCCTATTTGTCGCTTCCTTTTATTCTCCACTTA
TCTCCCCTTTTTTTGCTATACTACCGATCAACATTGTTATATATCATATC
TTTTTAGACC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCCCTTCTGGTGGATGGGGAAGTGG
AATAGTCAATCACAGCTCTTCTTACTTCTCAGGTTTAAGTTGGGGATAAA
GGCTAGACTATGAGTTTTGAAGGAGCCGAAACTAGAGGGGAAAAAATAGC
TCTATATCCTCTTTTATGACCTGTGTGCCCCTTTGCCTATCTTCTGTCCA
CCCTGTCACCTACTGTCGGTTTCCGTGTCTCCGTTCGGAATTTTAGGCTC
CCGCCACCATTCCACAATTCATTTCGTAACCTGCTTGCGTCTAAGCGTTG
TCTGAACATTACTGGATAGTATAATCCTTAATCGATCCTTCGCTCTTGTA
CTTCGGATAACGCTGTGCTGCCTGTTTATCTATGTTTACCTGAGCGATTA
TATCCTTGATAACTGTGGTCTTACATGAATTACTTATTTTGATTTTTGCC
CTCTCGTGGATGACAGATTTCATTGTTTTCTTGGACTAGTCTACTGATAC
TTTCCATGTTAGTCTCTTGTCCTCCTATTTAACCTGGTCTTCTGATACCT
CTCCAGTTCTTTTTCTCTGTCCTTTGGCTCTCTACCTCTTCCGCTATTTC
CTCTCCTCTCTCTTTTCCGTTTTGCTCACAAGCTTTGCCTCCTTCTCTCT
TATATTTTTTGTGTTTTTCGGCGACCCTGTTTCTTCTCTCCGCTCGCCCT
CGTGTTTACTCTTACTTCTGTCTGTATTAATCCATCTCTCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_j04.g1 MSMg01no432_j04.g1 CHROMAT_FILE:
MSMg01no432_j04.g1 PHD_FILE: MSMg01no432_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:20 2005
         (254 letters)



>mm_chr1_37982173_37982826
          Length = 654

 Score =  427 bits (221), Expect = e-124
 Identities = 245/253 (96%), Gaps = 2/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcccttctggtggatggggaagtggaatagtcaatcacagctcttcttacttctcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcccttctggtggatggggaagtggaatagtcaatcacagctcttcttacttctcagg 260

                                                                       
Query: 61  tttaagttggggataaaggctagactatgagttttgaaggagccgaaactagaggggaaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaagttggggataaaggctggactatgagttttgaaggagccgaaactagaggggaaa 320

                                                                       
Query: 121 aaatagctctatatcctcttttatgacctgtgtgcccctttgcctatcttctgtccaccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aaatagctctatatcctcttttatgacctgtgtgcccctttgcctatcttttgtccaccc 380

                                                                       
Query: 181 tgtcacctactgtcggtttccgtgtctccgttcggaattttaggctcc-cgccaccattc 239
           ||||||||||| || ||||| |||||||||||| |||||||||||||| | |||||||||
Sbjct: 381 tgtcacctactctcagtttctgtgtctccgttctgaattttaggctccac-ccaccattc 439

                        
Query: 240 cacaattcatttc 252
           |||||||||||||
Sbjct: 440 cacaattcatttc 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)