Query= MSMg01no433_e13.b1 MSMg01no433_e13.b1 CHROMAT_FILE:
MSMg01no433_e13.b1 PHD_FILE: MSMg01no433_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:20 2005
(506 letters)
>mm_chr1_23865562_23866468
Length = 907
Score = 932 bits (482), Expect = 0.0
Identities = 501/508 (98%), Gaps = 3/508 (0%)
Strand = Plus / Minus
Query: 1 catttctgtggtctctgctacttgggaagttgagccaggaggcctgcaagttgaaggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 catttctgtggtctctgctacttgggaagttgagccaggaggcctgcaagttgaaggcct 747
Query: 61 acctgagcaacttagtgagactttgactcaaaataaaaagtgaagtaggtgttggaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 acctgagcaacttagtgagactttgactcaaaataaaaagtgaagtaggtgttggaagtg 687
Query: 121 tagcttattgatagccttggcctgtcatataagatgataggtgcagccccaagtaccaag 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tagcttagtgatagccttggcctgtcatataagatgataggtgcagccccaagtaccaag 627
Query: 181 ggggagaaagtcatanat--tttcatttagaggttgaatttctgtattcactattcaagg 238
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggggagaaaggcata-ataatttcatttagaggttgaatttctgtattcactattcaagg 568
Query: 239 gtcttgttgtatagaaatttctactgtaagttcaaagaccatgcctacctgtttaaaaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtcttgttgtatagaaatttctactgtaagttcaaagaccatgcctacctgtttaaaaaa 508
Query: 299 taataaatgctttaggattccttatactaacttcatgaaaattatgcataagtgtaagtg 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 507 taataaatgctttaggattccttatactaactccatgaaaattatgcataagtgtaagtg 448
Query: 359 ggacttaaatattcgtttaataaactaatcaatgaatccaatgatttacttcaaagctgc 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggacttaaatatttgtttaataaactaatcaatgaatccaatgatttacttcaaagctgc 388
Query: 419 cgaagaaagaagagcaacaacttgagcctaagaaaagcaccagcccaaaaaatgctgcag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgaagaaagaagagcaacaacttgagcctaagaaaagcaccagcccaaaaaatgctgcag 328
Query: 479 agcccactattgatcttctaggacttgg 506
||||||||||||||||||||||||||||
Sbjct: 327 agcccactattgatcttctaggacttgg 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_e13.g1 MSMg01no433_e13.g1 CHROMAT_FILE:
MSMg01no433_e13.g1 PHD_FILE: MSMg01no433_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:20 2005
(476 letters)
>mm_chr1_23720867_23721742
Length = 876
Score = 920 bits (476), Expect = 0.0
Identities = 476/476 (100%)
Strand = Plus / Plus
Query: 1 tttaaaggacacggaatgacagttgctgtaatgtatccatataaatgcagaaaacccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaggacacggaatgacagttgctgtaatgtatccatataaatgcagaaaacccact 260
Query: 61 ggtgcaactccagaatatttcattacaatgatggtggtctcctagcacatgaaggctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcaactccagaatatttcattacaatgatggtggtctcctagcacatgaaggctaaa 320
Query: 121 agtcaaaacagtgaaggatagctaaaactataatgattcattaaggaatacataatatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaaaacagtgaaggatagctaaaactataatgattcattaaggaatacataatatat 380
Query: 181 agagggtcatcactgtagtagaaattatcagtagaccagaagaatggtatgtgttatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagggtcatcactgtagtagaaattatcagtagaccagaagaatggtatgtgttatgta 440
Query: 241 agcatcatgtaaacagtaaacaaaaagctcattggagccaaatagagagagaagcacact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatcatgtaaacagtaaacaaaaagctcattggagccaaatagagagagaagcacact 500
Query: 301 tcaagttagcattacagacaactagcaaatcccaaagaaaactgatggagaaactaggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagttagcattacagacaactagcaaatcccaaagaaaactgatggagaaactaggat 560
Query: 361 cctaatcgcaatagtaagtccttacatactaataataatgtaaaaggattaaattctcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaatcgcaatagtaagtccttacatactaataataatgtaaaaggattaaattctcca 620
Query: 421 accaacactcactggctaaacgaattttaaaaagcaaaaccccactataagctgtc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaacactcactggctaaacgaattttaaaaagcaaaaccccactataagctgtc 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
