Query= MSMg01no433_h05.b1 MSMg01no433_h05.b1 CHROMAT_FILE:
MSMg01no433_h05.b1 PHD_FILE: MSMg01no433_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:32 2005
(438 letters)
>mm_chr1_29623873_29624710
Length = 838
Score = 721 bits (373), Expect = 0.0
Identities = 409/421 (97%), Gaps = 2/421 (0%)
Strand = Plus / Plus
Query: 19 cacacacacacacacacacacacacatatatttccttctggggactcttatccatggact 78
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 219 cacacacacacacacacacacacacatgtatttccttctggggactcttatccatggact 278
Query: 79 agttaggctgaccttaaagcacaaagctgatagaatgcagagcaaagatgtctgcttctt 138
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 agataggctgaccttaaagcacaaagctgatagaatgcagaacaaagatgtctgcttctt 338
Query: 139 tacctggtgcattcctccagggactagcactggctttttgactactgcaagttaataaat 198
|||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 339 tacctggtgcattcct-cagggacaagcactagctttttgactactgcaagttaataaat 397
Query: 199 ctacacttgaggcagagtcacttatctcctgagttttttacatgagttgaaaatggcagt 258
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 398 ctacacttgaggcagagtcacttatctcctgagtttttcacatgaattgaaaatggcagt 457
Query: 259 g-catggtattgtcttgtgaaatgcagtttaacaaatatttctgtgaagtttcttcagca 317
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gccatggtattgtcttgggaaatgcagtttaacaaatatttctgtgaagtttcttcagca 517
Query: 318 tcagtgtcaagggaacataatcttttcaaaggcctgagacaagaaaatccatattttgga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcagtgtcaagggaacataatcttttcaaaggcctgagacaagaaaatccatattttgga 577
Query: 378 atctagatggaaatattttgtgaattaaaatatatttgaaattatataagaaataaagct 437
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 578 ttctagatggaaatattttgtgaatgaaaatatatttgaaattatataagaaataaagct 637
Query: 438 t 438
|
Sbjct: 638 t 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_h05.g1 MSMg01no433_h05.g1 CHROMAT_FILE:
MSMg01no433_h05.g1 PHD_FILE: MSMg01no433_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:33 2005
(498 letters)
>mm_chr1_29834423_29835319
Length = 897
Score = 901 bits (466), Expect = 0.0
Identities = 490/498 (98%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 1 accaaatcttgtccaaggcactttcccctttgtttcatgtgttctaattgcaaagaaatc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 697 accaaatcttgtccaaggcactttcccctttgtttcatgtgttttaattgcaaagaaatc 638
Query: 61 tctattggagacattatatatgttgatagagaaaaaaggtttccacatgatggttaaaag 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 637 tctattggagacattatatatgttgatagag-aaaaaggtttccacatgatggttaaaag 579
Query: 121 acattagagttattcattttaatgattcaatctcatacacatattgttgaaccaaaaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 578 acattagagttattcattttaatgattcaatctcatacacatattgttgaacctaaaatc 519
Query: 181 acatgttataaagtaaaacatcagaaggatgggttattataagaaccaagtacatgctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acatgttataaagtaaaacatcagaaggatgggttattataagaaccaagtacatgctga 459
Query: 241 actttataacaccgatgtagagaaaatatgtatatgataaaaaaaccaaaaaatacaaaa 300
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acttaataacaccaatgtagagaaaatatgtatatgataaaaaaaccaaaaaatacaaaa 399
Query: 301 aatgttaagtatgaaattcagaataactgcatgttaaacagagagttgtatacaataagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aatgttaagtatgaaattcagaataactgcatgttaaacagagagttgtatacaataagg 339
Query: 361 aagacacaaaaagacctggaactattggtagttatttgtgtctcatagtgaatagtaggt 420
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 338 aagacacaaaaaaacctggaactattggtagttatttgtgtctaatagtgaatagtaggt 279
Query: 421 aaatatatttatcacattattttatgtgacagatacatgtttttctgatttaattaaata 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaacatatttatcacattattttatgtgacagatacatgtttttctgatttaattaaata 219
Query: 481 tccatagcatgttttaat 498
||||||||||||||||||
Sbjct: 218 tccatagcatgttttaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 897
Length adjustment: 10
Effective length of query: 488
Effective length of database: 887
Effective search space: 432856
Effective search space used: 432856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
