AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTATTGCCTCCATTTATTTCACAGTTGAGAAAAATATAGCTGACAGAA
GTTAAGACCACAAAATGTCATGATGGTCATTTTTTTCATCAAGCTTTATG
CTTGCATTGTTCAAGCACCTATGTTTTTGTTATTTTACTGTAAGATTTTA
CATATATATGACCTAAATTATTTTAGTAGGGTTCTAGATCATGTGCACAG
CGGATATTGAAATGAAAGGAAATCATGTCTAGCTGTTATTTTTTCAGGAA
GTGTCAAATGAATGAAAACTCCATAAGAAGTAAGTTTGGGATGAGATATA
ATGATTCAATCAATATCCTGTAAGAATAAAAAGAAAAACTTGGGACAACA
TTATTGTTTTCTTAATATGATCTCCAACCACTTTTATAACTTTTTTGGAT
CTTAATTTTTCTCTTGTTGTAGCCATCATATCTCCCTGAATTATTTTATT
CTTATTCTTTCCAAGTGCTATCTTANAATTTATTCTTGCAAATTATTTCA
TAGGATGCCCCAACCCTACCTTGTATGATAAAGATGAAACTCTATCCCAC
CTTTTAACTCTCTTCCAAGAAAAAAATTCTCAAATTTTTTAGAAACATCC
CCTTTGAAACCCCACATTCCTAAGCAAAATATTTTCCCTACGTTTTTCCC
CACATTGGAACGCCCACATTACAACTTGTTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACAGAAGTACCA
GTGAGTACAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAAT
TCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTACGC
CTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAG
TGGAAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTT
AGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGC
GGATTCTGGATGAAGTTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAG
AGAATAGGAGCAAAGAGAAAATATGGTTCACAAAATAAGTATACAGGCCT
TTCCAAGGGTCTTGAACCCAAGGAAAAGTTTAGGTCAGGCAAGAATACCT
GGGGAGAGATTAGAAGGAAGGAGAAGGACAAAGAACAGACAAATGATCTC
TTCACCTTATGTCTCTATGCAAATGACCCTATACTCCTCCCTAAGTGAGT
TTCAGGAGCCCGCTCTCAACAACCTTGAATTGATGACCATGCTTCTTTTC
CTCTGTTCTGCGCTTTTTCCCAAAATCCGTATGTCTCTGTACCCCAATTA
CCCCACCGTGTCCCCTTTCGCCTCCTTTTGCCTCTCATTCC

Query= MSMg01no433_o03.b1 MSMg01no433_o03.b1 CHROMAT_FILE:
MSMg01no433_o03.b1 PHD_FILE: MSMg01no433_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:06 2005
         (485 letters)



>mm_chr1_113791701_113792588
          Length = 888

 Score =  768 bits (397), Expect = 0.0
 Identities = 462/485 (95%), Gaps = 9/485 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattattgcctccatttatttcacagttgagaaaaatatagctgacagaagttaa 64
           |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 686 gaattcattaatggctccatttatttcacggttgagaaaaatatagctgacagaagttaa 627

                                                                       
Query: 65  gaccacaaaatgtcatgatggtca---tttttttcatcaagctttatgcttgcattgttc 121
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 626 gaccacaaaatgtcatgatggtcattttttttttcatcaagctttatgcttgcattgttc 567

                                                                       
Query: 122 aagcacctatg-tttttgttattttactgtaagattttacatatatatgacctaaattat 180
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aagcacctatgttttttgttactttactgtaagattttacatatatatgacctaaattat 507

                                                                       
Query: 181 tttagtagggttctagatcatgtgcacagcggatattgaaatgaaaggaaatcatg-tct 239
           ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || 
Sbjct: 506 tttagtaggattctagatcatgtgcacagcagatattgaaatgaaaggaaatcatgttc- 448

                                                                       
Query: 240 agctgttattttttcaggaagtgtcaaatgaatgaaaactccataagaagtaagtttg-g 298
           |||||||| ||||||||||||||||||||||| ||||| ||  ||||||||||||||| |
Sbjct: 447 agctgtta-tttttcaggaagtgtcaaatgaaggaaaaatctgtaagaagtaagtttgtg 389

                                                                       
Query: 299 gatgagatataatgattcaatcaatatcctgtaagaataaaaagaaaaacttgggacaac 358
           | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 388 g-tgggatataatgattcaatcaacatcctgtaagaataaaaagaaaaacttgggacaac 330

                                                                       
Query: 359 attattgttttcttaatatgatctccaaccacttttataacttttttggatcttaatttt 418
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 329 attattgttttcttaatatgatcaccaaccacttttataacttttttggatcttaatttt 270

                                                                       
Query: 419 tctcttgttgtagccatcatatctccctgaattattttattcttattctttccaagtgct 478
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctcttgatgtagccatcatatctccctgaattattttattcttattctttccaagtgct 210

                
Query: 479 atctt 483
           |||||
Sbjct: 209 atctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 888
Length adjustment: 10
Effective length of query: 475
Effective length of database: 878
Effective search space:   417050
Effective search space used:   417050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)