XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGTTCCATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAACATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAG
GCTTGTACAACCACTATGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGG
ATATAGTACTACCTTTTTATCCAGCAATACCTCTCCTGGGCATATATCCA
GAATATGCCCCAACTGGTAAGAAGGACACATGCTCGACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAA
CAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCTAATGGATGGA
CCTGCAGGTCATCATCCTGAGTGAGGTAACAATTTCTCAATGGAACTCAC
TCAATATGTACTCACTGGATAAGTGGATATCATCCCTTATATCTTATAAT
CCCCAGATATTTTTATTCATTGTCCTAAAACCTTGTATCCTCTTTGAATA
ATGATTTACTGGAAGTGATGTACTCCTATTTTCCCTCCCCTCTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAAAATCTATCCTTCCTTGCAGGTTAACTGGGA
GTATTTAGGCACACTTGTAGAATCACACCATCATGGAACACGATCTATCA
ACAGACAGAACATGCCAGATATCACTGTGGCTTAACCCAGAATAAAGGTC
AGTGTGATATGTGGGCTAGAGATGGTCACCAAGGCAGGTATAACATAAAC
AGGCTGGACTAACAGGCTATAGGGGAGAGACATTCTCCCAAATCAGAAGT
ATTGGAGTATGAAGCCCAAGGACAAAACAAATCCCTTGAATCAACGATGC
TTCAAAGTGGTGACCAGACCCATACCTGATGACTTTGATGATACCTCCTT
GAACAAATCAGATCCTAGTCTCTTGCAGCATCAGGCCCAGGGGTAAGGCA
CTTTGATGTGACTACTCCTGGGAACACATTAGCAAACATATATATTGCAA
ATCAAATAGCATACCAATGGCAAACCACAGTCCAACTCAGTGAAATAATT
AGTTTATTGAACTTAGTTATGAAGTATGGACATGGGGTTATTTACAGGAA
CATGGACCACTCAAAGAAAGGTGGACCAACAGAATTCCCCCTCAGATGGA
TGACCCAAACGATTTGGGGTTCTTTTCTAATAACAGGAATTGATGTAAAA
AATTCCCCCCGGAAAATTGTTGTTGGCCAAAATCCTTAAAAAAAATTT

Query= MSMg01no434_n12.g1 MSMg01no434_n12.g1 CHROMAT_FILE:
MSMg01no434_n12.g1 PHD_FILE: MSMg01no434_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:22 2005
         (469 letters)



>mm_chr1_102807899_102808767
          Length = 869

 Score =  766 bits (396), Expect = 0.0
 Identities = 442/462 (95%), Gaps = 9/462 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaaatctatccttccttgcaggttaactgggagtatttaggcacacttgtagaatca 60
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 461 cagaaaatctatccttccttgcaggttaagagggagtatttaggcacacttgtagaatca 402

                                                                       
Query: 61  caccatcatggaacacgatctatcaacagacagaacatgccagatatcactgtggcttaa 120
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 401 caccatcatggaacacggtctatcaacagacagaacaggccagatatcactgtggcttaa 342

                                                                       
Query: 121 cccagaataaaggtcagtgtgatatgtgggctagagatggtcaccaaggcaggtataaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cccagaataaaggtcagtgtgatatgtgggctagagatggtcaccaaggcaggtataaca 282

                                                                       
Query: 181 taaacaggctggactaacaggctataggggagagacattctcccaaatcagaagtattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaacaggctggactaacaggctataggggagagacattctcccaaatcagaagtattgg 222

                                                                       
Query: 241 agtatgaagcccaaggacaa--------aacaaatcccttgaatcaacgatgcttcaaag 292
           ||||||||||||||||||||        ||||||||||||||||||||||||||||||||
Sbjct: 221 agtatgaagcccaaggacaaagtgaaggaacaaatcccttgaatcaacgatgcttcaaag 162

                                                                       
Query: 293 tggtgaccagacccatacctgatgactttgatgatacctccttgaacaaatcagatccta 352
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cggtgaccagacccatacctgatgactttgatgatacctccttgaacaaatcagatccta 102

                                                                       
Query: 353 gtctcttgcagcatcaggcccaggggtaaggcactttgatgtgactactcctgggaacac 412
           ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct: 101 gtctcttgcagcatcagtcccagtggtaaggcactttgatgagactactcctggggacac 42

                                                     
Query: 413 attagcaaacatatatattgcaaatcaaatagcataccaatg 454
           |||||| ||||||||||||||||||||||||| | |||||||
Sbjct: 41  attagc-aacatatatattgcaaatcaaataggacaccaatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)