BAC Information

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BAC

Clone NameMSMg01-434O06
Chromosome1 (Build37)
Map Location 184,417,505 - 184,417,747
singlet/doubletsinglet
Overlap geneCapn2
Upstream geneCcdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2
Downstream geneLOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434O06.T7 (MSMg01no434_o06.b1)MSMg01-434O06.TJ (MSMg01no434_o06.g1)
ACCAG526323AG526324
length819780
length of high quality
(start - end)
39 (70 - 108)244 (65 - 308)
definitionCHROMAT_FILE: MSMg01no434_o06.b1 PHD_FILE: MSMg01no434_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:26 2005CHROMAT_FILE: MSMg01no434_o06.g1 PHD_FILE: MSMg01no434_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCCCAAGAGGATCCGCGGAATTCCTGCT
ATTCCCTTATGTATAAACAACAGAAATGTATGTGTTCGAGAAGCTGACGA
TGAATTGGTATTGGTGACAGCCACTCTCTCTGCTTGATGCCTGGCAGAAC
CGTGACGGGGCAAGAGGACCTGGCTAACTCTCCCGCCCTATCAGAGGAGC
ACTGATGCCTAAAGGCCACCCCTTAGCATAATCACACCGGACTTGGGGGC
TGCCATTGAATCTTGTGAGGACACATAGTCGACCAAAGGCACCACAGCAG
TCTCCTATTTTTTTCAGCGTAGGTCCTCCCCTCCTGGCTGAAGAGCACAC
ACATTCACCTTAGTCCTCAGTGCGAGGGTTCTTTACTCATGTCTGCGATA
CTCTCCTGCTCATCTTTTATTACCTGTGCCTCCCCTCGTACGATGAACTG
CTTCCCATTTTCCTACTCCTGTCACTTTCTTGTATTGTTTCTCAGTTTTC
AGCACAATTCAAATCCCCTCTCCTTGTCTCCCTTTTTCTTTCCTCTCTTT
CACTTCTTCCTTATGCTTTTCTCCATCTGTTTTTCCTCTTTGTTCCTGCA
TTCTTCTCATCTTTTCTCTCCTATGCTTTTTACTCTCTTTGCACCTACCT
TACACCTCCCTTTTTCTCCATTCTCTTTCCTCCATCTTGCAAACCGTCGT
TCTCACCCTCCTCTCGTTCCAACTTTTTTCTAAAACTTCTTTCATCACTC
TTTTTCCTAATACTTTTTTCCATTCTCCTCTCCTCTCTCCCCTCTTTTTT
ATCTCCCATTTTTGTCTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTCTCAGCCCTTGTGAAATTGCCGAGTGTTAACCCC
ACAGCTGAGATGGACAAATTGAAGAGATTTAAAAGCTGTTTAGGATCATA
TAGAGTTTTTTTTTTTTTCTTTGTTGGAAACAGGTTCTTTCTGGATAGCC
AAGGCTATGCAGCTTGGTCTCCAGTTTGAGAGCCCTCTACCTCAATTTTT
AGAGAGCTAAGATTACAGAGGTGCGCCACCTGCTTGGGACTTAGATGCAT
GAAGAGCATTTTTTTCAGGTTGCCCTACCACACGTCCTCAGCGTGCTGAA
CGCATTGCTGACTGGTGCCCTGGTTAGGAATGTCCCTGCCGCCCCTGCTG
CCTTACCAGATTTCTCCGTCCTCCTGCCGTTCGGTTAGATTTGCCCTTAC
TTCCGGCCCAACCGTGCTCCAGCTGTTCTCCTTGCATGTCGATCTTGCTT
ATAGCTCTTAAGAATCAGGGTGTGACATTGATCATGCTCTCTCCTCTGTC
CTCCATAGTTGGAGGCCCTGCATCTTCTCTTACTTTTGTTTCCCTCTTTG
TGGTCCCTACCTCCCTTTACTCTTTGATTCCCCTGGTATTACCGTCCCTA
TTCTTTTATTTCTTTATTTTACCTTAACCTTCTTGTTCTCTCGTCCTTCT
TATTCCATGTCTTCTCCCTCTTTCTTTTCTTCTTATCTTCTTTCTAAATT
TGTATCCACTTATCTTTCATTTGTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_o06.g1 MSMg01no434_o06.g1 CHROMAT_FILE:
MSMg01no434_o06.g1 PHD_FILE: MSMg01no434_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:26 2005
         (244 letters)



>mm_chr1_184417305_184417948
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcagcccttgtgaaattgccgagtgttaaccccacagctgagatggacaaattgaag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcagcccttgtgaaattgccgggtgttaaccccacagctgagatggacaaattgaag 260

                                                                       
Query: 61  agatttaaaagctgtttaggatcatatagagtttttttttttttctttgttggaaacagg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 agatttaaaagctgtttaggatcatatagagtttttttttttt-ctttgttggaaacagg 319

                                                                       
Query: 121 ttctttctggatagccaaggctatgcagcttggtctccagtttgagagccctctacctca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 ttctttctggatagccaaggctatgcagcttggtctccagtttgagagccctcttcctca 379

                                                                       
Query: 181 atttttagagagctaagattacagaggtgcgccacctgcttgggacttagatgcatgaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 atttttagagagctaagattacagaggtgcgccacctgcttgggacttagatgcataaag 439

               
Query: 241 agca 244
           ||||
Sbjct: 440 agca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)