BAC Information

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BAC

Clone NameMSMg01-435B01
Chromosome1 (Build37)
Map Location 139,591,564 - 139,592,014
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B01.T7 (MSMg01no435_b01.b1)MSMg01-435B01.TJ (MSMg01no435_b01.g1)
ACCAG526456AG526457
length764754
length of high quality
(start - end)
462 (36 - 497)390 (75 - 464)
definitionCHROMAT_FILE: MSMg01no435_b01.b1 PHD_FILE: MSMg01no435_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:40 2005CHROMAT_FILE: MSMg01no435_b01.g1 PHD_FILE: MSMg01no435_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCATATTTGCGGCGCTATACGACTCCTATATTCAGAGGATCCGCGGAAT
TCAAACTCAGTTCCCTCTACTTTTACAGCAAGCGCTTTACCCACAGAGCC
ATCCCTTTAACTGTACATGGTTTATTTTATGTGTAAAGTCAAGCCAGAGA
AAATGATATAAAAAGATGGAAGAAGAAGAAATTGGGGAAAGGATGAGAGG
CAATGAGGGGTGGATATGATCAAATTACATCATATGCATGTATTAAAATA
TAACAATGAAACATAATTAGTGTATGCTAATAAACTTCAAATATTAGAAT
TTTATAATTTCAAAATTGTAACAAAATATTTATCTAGGATGAGCATAAAG
GAATAATGTGAACAGGCCATAAAATTTAAAGAGAATCTACAAAGTTGATT
GTAGCATTTCTGTAGTATTTATGATTTAAAAATTATCTATTATGAAAATA
AAGTTCTCATGTATGCATATTTATTTTAACTAATTTAGAAATTATTCAGC
ACATGTACAGAGATTGCTCAAAGGTTAGGAGCATGGACTTCCTCTTGCAG
AGGATCCCTATTCATCTCCCAGGTAACTCACAAGTCCCTGTCATTTCACT
CCTGGAACATCCACCACCCTTTGTTTTCGCCATAGTTCTTGTACTATAAT
GCTGTTTTCTCTCCCCCCTGCTGCCTCTTCTTCTCCTTTCCCTCCTCTAT
CTTTACCCCACCTTATACTCCGCTCGTCTTCCTTCTCCCCTTTTCGCTTC
GGATTTATATTATT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAGTAGAAGAAATTAACTTCAGATAG
GCTTGTTGAAGAGATTTTGCAAGCCTGGAAGCTGGGTCCAGGGTGTGCAG
CTGGCATTGGGTTCTGACAGGAGCAAGTCTACTCTCTGTGTTTATATGTA
ATCATTGGGATCCACAGAGGCATGCCTGGAGCCTGAGTTCATAAAGGCTG
ATCTGACATTAATGTGATCTTGCCATCTGGGTTGATAGGGGCCATCTGGC
ATTAGACTCTCCTGGGGCAGGCCTGGAGTTTGAATCTACAAGGAGGCACC
TGGAGCCTAGTTCTATAGGAGCTAGCCGGTTAGTAGGCAGAGCTACCATG
CGGTCATCTTGGCTCTGAAGCCTGGATCTATGTGTGTTTTTATTTTTCTA
TCANAAATAATAAGAAAATTCTCTTATGATTAAGACTTGTTGGCCCTAGA
GAGACGTTCCCATTTTTAATTATTTATACTGATCTTCCGCACATAACTAT
TTGTGTGTTCCACCCCCCCCCCTTATTTTCATTTCTTTTTGTCTCGCCGC
AATCCTCGGCCTTCTTTTATCCCTCGCCTCTTCTGTCCCACTGGGGTCCC
CTCCCCCTCTTTCTCCCCTTATTCATGCCCGTGGGGGCGCGAAGCTCCAT
AACATGGAAGTCATCCTTCCCTTACCTCCTTCTTATTCTTTCTCTCCCTC
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b01.b1 MSMg01no435_b01.b1 CHROMAT_FILE:
MSMg01no435_b01.b1 PHD_FILE: MSMg01no435_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:40 2005
         (462 letters)



>mm_chr1_139591288_139592148
          Length = 861

 Score =  859 bits (444), Expect = 0.0
 Identities = 450/452 (99%), Gaps = 1/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggaattcaaactcagttccctctacttttacagcaagcgctttacccacagagccatccc 70
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggaattcaaactcaggtccctctacttttacagcaagcgctttacccacagagccatccc 668

                                                                       
Query: 71  tttaactgtacatggtttattttatgtgtaaagtcaagccagagaaaatgatataaaaag 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tttaactgtacatggtttattttatgtgtaaagtcaagccagagaaaatgatataaaaag 608

                                                                       
Query: 131 atggaagaagaagaaattggggaaaggatgagaggcaatgaggggtggatatgatcaaat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atggaagaagaagaaattggggaaaggatgagaggcaatgaggggtggatatgatcaaat 548

                                                                       
Query: 191 tacatcatatgcatgtattaaaatataacaatgaaacataattagtgtatgctaataaac 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tacatcatatgcatgtattaaaatataacaatgaaacataattagtgtatgctaataaac 488

                                                                       
Query: 251 ttcaaatattagaattttataatttcaaaattgtaacaaaatatttatctaggatgagca 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttcaaatattagaattttataatttcaaaattgtaacaaaatatttatctaggatgagca 428

                                                                       
Query: 311 taaaggaataatgtgaacaggccataaaatttaaagagaatctacaaagttgattgtagc 370
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 427 taaaggaataatgtgaacaggccataaa-tttaaagagaatctacaaagttgattgtagc 369

                                                                       
Query: 371 atttctgtagtatttatgatttaaaaattatctattatgaaaataaagttctcatgtatg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atttctgtagtatttatgatttaaaaattatctattatgaaaataaagttctcatgtatg 309

                                           
Query: 431 catatttattttaactaatttagaaattattc 462
           ||||||||||||||||||||||||||||||||
Sbjct: 308 catatttattttaactaatttagaaattattc 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space:   384652
Effective search space used:   384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)