BAC Information

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BAC

Clone NameMSMg01-435B04
Chromosome1 (Build37)
Map Location 34,206,151 - 34,206,347
singlet/doubletsinglet
Overlap geneDst
Upstream geneLOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B04.T7 (MSMg01no435_b04.b1)MSMg01-435B04.TJ (MSMg01no435_b04.g1)
ACCAG526462AG526463
length670865
length of high quality
(start - end)
472 (54 - 525)203 (86 - 288)
definitionCHROMAT_FILE: MSMg01no435_b04.b1 PHD_FILE: MSMg01no435_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:40 2005CHROMAT_FILE: MSMg01no435_b04.g1 PHD_FILE: MSMg01no435_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAACTGACCGAAATGGAGTGGCCGAATATGGAAGCA
CCTAAAGAAATGTGCAACATCCTTAGTCATCAGGAAAATGCAAATCAAAA
CAATTCTGAGATTCTACTTCACACCAGTCAGAATGGCTAAGATCAAAAAC
TCAGGTGACAGCAGATACTGGTGAGAATGTGGAGAAAGAGAAACACTCCT
CCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTT
GGTGGTTCCTTAGAAAATGGACATAGGATCAATTGAGGACCCAGATACAC
CTTTCTTGGGCATATATCCAGAAGATGCTCCAACATGTAATAAGGGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAAGAACCCAGATGTCCTTCAA
CAGAGGAGTGGATACAGAAAATGTGATACATTTACACAGTGAAGTACTAC
TCAGCTAATAAATACGACAAATTCATGAAATTCTTAGGCAAATTGATAGA
ACTAGAATATATCATCCTGAGTGAGGTAACCTAATTGCAAAAGAACACAC
ATGGTATGCATTCACTTGATAATGCACATAATTATTCCTTAAAGCTTCCT
AATAACCCTAAGATATAAAA
NTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGAGGCAAAGA
TAGATAGATGAGGCCAGCCTGGTCTACGTACACAGTCCTAGGCCATCAGG
GCAACATAGACCCTGTCTCAAAAACAAGGGCACACCACTTCTGTACATTC
TTAGTAGGCATAACATATTATAAAAATATAAAGTAAAAATGTATTTTTGA
AAAAGTGTGCTGATCAGGTTTTTTGTTTGTTTGTTTGNTTTTATGTTTGT
GNTGTTGGCGCGTGTTGGGTTGTTGTTTTGTGGGCGGGCGCGCGGTGGGT
CGGGGCGGTGTTTTTTGTGTCTTTTGCCCGTCCGGCGATGTCCCTTTTGC
CGTCCTTTTTGTTTGTCGTTTTGTGGGTTTCCCTGTCTTTTTCGGTCTCT
TTTTTTTCCCCCTCTCCTTTCTCCCGCGCCCTTTGTGCCTTCTTTCCTCC
GCCCGTTGTTCCTTTGTTTCCCCGTTCTCCCTTACTCCCTCTTTGTCTTT
TGCCCTCTTTGTGTTGCTCCCTTCTTCCTGTGTTTTTATAACCTCCTGTC
TTTGTATACTGTACTCTCTGTCGTTGGTTGGCCGCGCGCTATTTATATTT
TTTTCTTTTCTCTATTTCCTCTCCCCCGCCTTCCCCTTTTTTTTGTTCCT
GCCGCCTATTCTTATACTCTCATCTTTCCTTACCCGCGAGTTATGTGGGA
CCGTCACTGTAGTTAAGCCGCGAGTCTGTACGATAGCCTCGTTCTTCTAT
TATTGTTTGGCTGACTGACCTGACTTACTCCCCGCCGCCGTATCTTTTTC
TCTCTTTACGCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b04.g1 MSMg01no435_b04.g1 CHROMAT_FILE:
MSMg01no435_b04.g1 PHD_FILE: MSMg01no435_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:40 2005
         (203 letters)



>mm_chr1_34205862_34206464
          Length = 603

 Score =  358 bits (185), Expect = e-103
 Identities = 194/197 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcagaggcaaagatagatagatgaggccagcctggtctacgtacacagtcctaggcca 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 486 actcagaggcaaagatagatagatgaggccagcctggtctatgtacacagtcctaggcca 427

                                                                       
Query: 61  tcagggcaacatagaccctgtctcaaaaacaagggcacaccacttctgtacattcttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcagggcaacatagaccctgtctcaaaaacaagggcacaccacttctgtacattcttagt 367

                                                                       
Query: 121 aggcataacatattataaaaatataaagtaaaaatgtatttttgaaaaagtgtgctgatc 180
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 366 aggcataatatattataaaaatataaagtaaaaatgtatttttgaaagagtgtgctgatc 307

                            
Query: 181 aggttttttgtttgttt 197
           |||||||||||||||||
Sbjct: 306 aggttttttgtttgttt 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)