Query= MSMg01no435_f13.b1 MSMg01no435_f13.b1 CHROMAT_FILE:
MSMg01no435_f13.b1 PHD_FILE: MSMg01no435_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:02 2005
(411 letters)
>mm_chr1_181478040_181478850
Length = 811
Score = 772 bits (399), Expect = 0.0
Identities = 405/407 (99%)
Strand = Plus / Plus
Query: 5 gaattccagacctagcaccatttttaaaaatttcacaatgcctgtggaccacagcctact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagacctagcaccatttttaaaaatttcacaatgcctgtggaccacagcctact 264
Query: 65 cagtccaaggaaacttggggcagggtttattttccttttgagtggttggcgttaggaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtccaaggaaacttggggcagggtttattttccttttgagtggttggcgttaggaaag 324
Query: 125 ttatatttatcattgtccttctttgttaggggtcaaagcctgggctttgcacacgcgctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatatttatcattgtccttctttgttaggggtcaaagcctgggctttgcacacgcgctg 384
Query: 185 ggcgagtgctctgccctggagctacctccccagctccctgtttctgtttgtgtatgtggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcgagtgctctgccctggagctacctccccagctccctgtttctgtttgtgtatgtggt 444
Query: 245 atgcatgtgtgtgcctgtgtagtgtgatgtcttgtgactgtcactgtccactgttttgtt 304
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 atgcatgtgtgtgcctgtgtagtgtgatgtcacgtgactgtcactgtccactgttttgtt 504
Query: 305 gagacatgttctgttcctgaccctggagctcagatcctgctgggctggctgtccgtcagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagacatgttctgttcctgaccctggagctcagatcctgctgggctggctgtccgtcagt 564
Query: 365 gtccacggctccgtctgcctccatcctccacgcactcaggttatggg 411
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtccacggctccgtctgcctccatcctccacgcactcaggttatggg 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_f13.g1 MSMg01no435_f13.g1 CHROMAT_FILE:
MSMg01no435_f13.g1 PHD_FILE: MSMg01no435_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:02 2005
(421 letters)
>mm_chr1_181611324_181612143
Length = 820
Score = 789 bits (408), Expect = 0.0
Identities = 418/422 (99%), Gaps = 3/422 (0%)
Strand = Plus / Minus
Query: 1 accttaaactatg-agagataggagacatcaagacatagacattcaagtctatgatacta 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accttaaactatgcagagataggagacatcaagacatagacattcaagtctatgatacta 561
Query: 60 gaggtcctggcgtaaacaaaaaaaaaacaaacagaaacaaacaatacctgtttttgtgtt 119
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaggtcctggtgtaaac--aaaaaaaacaaacagaaacaaacaatacctgtttttgtgtt 503
Query: 120 ggaccttgttttgaaaaatagccaaaggaaaagagccatgggaactacaggaaaaacaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaccttgttttgaaaaatagccaaaggaaaagagccatgggaactacaggaaaaacaac 443
Query: 180 agcaaaaacaaacttcaatattatcatcaaaacttcacaagaactatttctaaagattta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agcaaaaacaaacttcaatattatcatcaaaacttcacaagaactatttctaaagattta 383
Query: 240 atttaattaaaagcttacttacttttatgagaagttgtcttccaatgctaaacttcacaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttaattaaaagcttacttacttttatgagaagttgtcttccaatgctaaacttcacaa 323
Query: 300 agaataaaaagaacagtcctgcaaacatcagcttaatcacagaggtgatgcctcccaccg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaataaaaagaacagtcctgcaaacatcagcttaatcacagaggtgatgcctcccaccg 263
Query: 360 tcacataagcagcatactgaacctaggcgcacaaggcagaggcagaggcagagcgttact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcacataagcagcatactgaacctaggcgcacaaggcagaggcagaggcagagcgttact 203
Query: 420 ct 421
||
Sbjct: 202 ct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space: 334132
Effective search space used: 334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
