BAC Information

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BAC

Clone NameMSMg01-435L23
Chromosome1 (Build37)
Map Location 172,024,162 - 172,213,515
singlet/doubletdoublet
Overlap geneDdr2, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, LOC100040571
Downstream geneEG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435L23.T7 (MSMg01no435_l23.b1)MSMg01-435L23.TJ (MSMg01no435_l23.g1)
ACCAG526980AG526981
length822806
length of high quality
(start - end)		379 (42 - 420)348 (73 - 420)
definitionCHROMAT_FILE: MSMg01no435_l23.b1 PHD_FILE: MSMg01no435_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:36 2005CHROMAT_FILE: MSMg01no435_l23.g1 PHD_FILE: MSMg01no435_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,024,162 - 172,024,535)(172,213,168 - 172,213,515)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAAT
TCTTCTAATTTTTCTAAAGACAGAGCAGAGCTTTCTGCCACTTCTACACC
AGCTTCTTGCCTTGCTCCAGGGGGGAGGGTCTAGACAGGGTGTGTCAGGT
GTCGTGTCTCTAAACAGTCCAAAGAGGCTGGTCAACAAAATTCATCCCAA
GAAAGCTTTCCTTCTTGGCAACCGCGATATCTTTCCTTCGTTCTTTTAAT
TGTATCGCTATCATTTTGTAATCAGCATATTAATATGCAAGCACAGATTC
TTTTTAACAACAACCACAAAACAAACAAGCAAAGAGACAAGTCAGTCCTG
GTACCTGAGTCATCTGTAGTCAGTTACAGGTGTTTTACTCACAGTGTGTG
TCTGAAGGAGACTGCTAAAACAAATAGTGACCCCCCAGACACTGGCTGGA
AAATTCCTATTCATTGGCTGGAGCAAAGCCCGAAATAATTTTTTTTAGAC
TTCCCCCGGCATTCTGAAACATATTGGTACATTTTAAATCTCTACGTCAT
CCTGGCCCATCTTTTCTACACAAAATATAAACACCCTTTTCTTTTTTCTT
TCCTTTCCTCCTCTCTTGTTTTTCTATTGCCTTTCACTTTTCTTATCCTT
TTCCTTCTTCACCTTTTTTCTTATCCACTCTCTTTTTTCTTCCTTTTCCC
CCTCTTATTTCTTCCCTCTTTCTCCTCTCTTATTTATCTATTTTCATATT
CATTACTTTCCCCCCCCTCTTTTCTCCTTTCCTTTATTTTCCCCCTTCTT
CTTTTCCCTCTATATTTTCTTN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGTCAGCCTTTTTCCCAGGACCTTCC
CCTTCTCATCCCTGATTATAGGATTACAGGCTCTTCTAACCCTGTGTCAG
GGCTCTTACCATAAACATTCAGCTCTAACTCCATTCTTCTCCCTCTTTGG
CATAGGTTGTTTCTCATTATTGGGTTTGAAAGGTGAACCACCAATCCTTG
ACCCGGTTTTCCATATTTGGAGACCAATTCCTGTAGGTTTGGAAAGATCG
TTCTTGGAGTATGAGCATTAGTCTGCAAAGACATAAGGTCACTTACTGAA
CCACCAAGCAAAGAGTGAACAGGGCTTGACCTAGGCCCCCTGCAAATATG
CAGCAGAAGTGCAGCTTGGTCTTCATGTGGGTCCCCCAACAACTGAAGCA
GAGGCTATCCCTGAAACTGTTGCTTGCCTGCGGATCCACTTTCCCCATCT
GGGGCCCCCTGTTTGGGCCTCATTGGAAAAGGTTGCCCCTTCTTTCTGCA
TGGTCTCGACGGGGCCACGGTTAGATATTTCTCTAACCCCCCCCTGATCC
ACCCTATGGTTAACTTTCTCCTTTATTCACTCCTCTTTCTCTATTCCCTT
TTATACCCTTATTAGTACGTCTTAGCACCGCCATTTCACCCTACTTTTAT
AAATCCGAAGATGTAATATNCCCGAAATCCGCCACGTTCTCGCATAACCA
TCCTTTGGTATCTTTCTTTTACCGTCCCCATTATTGTCTCCACATCTCCC
CCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_l23.b1 MSMg01no435_l23.b1 CHROMAT_FILE:
MSMg01no435_l23.b1 PHD_FILE: MSMg01no435_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:36 2005
         (379 letters)



>mm_chr1_172023957_172024735
          Length = 779

 Score =  716 bits (370), Expect = 0.0
 Identities = 373/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttctaatttttctaaagacagagcagagctttctgccacttctacaccagcttc 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttctaattttcctaaagacagagcagagctttctgccacttctacaccagcttc 265

                                                                       
Query: 66  ttgccttgctccaggggggagggtctagacagggtgtgtcaggtgtcgtgtctctaaaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgccttgctccaggggggagggtctagacagggtgtgtcaggtgtcgtgtctctaaaca 325

                                                                       
Query: 126 gtccaaagaggctggtcaacaaaattcatcccaagaaagctttccttcttggcaaccgcg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtccaaagaggctggtcaacaaaattcatcccaagaaagctttccttcttggcaaccgcg 385

                                                                       
Query: 186 atatctttccttcgttcttttaattgtatcgctatcattttgtaatcagcatattaatat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atatctttccttcgttcttttaattgtatcgctatcattttgtaatcagcatattaatat 445

                                                                       
Query: 246 gcaagcacagattctttttaacaacaaccacaaaacaaacaagcaaagagacaagtcagt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcaagcacagattctttttaacaacaaccacaaaacaaacaagcaaagagacaagtcagt 505

                                                                       
Query: 306 cctggtacctgagtcatctgtagtcagttacaggtgttttactcacagtgtgtgtctgaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cctggtacctgagtcatctgtagtcagttacaggtgttttactcacagtgtgtgtctgaa 565

                         
Query: 366 ggagactgctaaaa 379
           ||||||||||||||
Sbjct: 566 ggagactgctaaaa 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_l23.g1 MSMg01no435_l23.g1 CHROMAT_FILE:
MSMg01no435_l23.g1 PHD_FILE: MSMg01no435_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:36 2005
         (348 letters)



>mm_chr1_172213044_172213791
          Length = 748

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtcagcctttttcccaggaccttccccttctcatccctgattataggattacaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaagtcagcctttttcccaggaccttccccttctcatccctgattataggattacaggct 413

                                                                       
Query: 61  cttctaaccctgtgtcagggctcttaccataaacattcagctctaactccattcttctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cttctaaccctgtgtcagggctcttaccataaacattcagctctaactccattcttctcc 353

                                                                       
Query: 121 ctctttggcataggttgtttctcattattgggtttgaaaggtgaaccaccaatccttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctctttggcataggttgtttctcattattgggtttgaaaggtgaaccaccaatccttgac 293

                                                                       
Query: 181 ccggttttccatatttggagaccaattcctgtaggtttggaaagatcgttcttggagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ccggttttccatatttggagaccaattcctgtaggtttggaaagatcgttcttggagtat 233

                                                                       
Query: 241 gagcattagtctgcaaagacataaggtcacttactgaaccaccaagcaaagagtgaacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gagcattagtctgcaaagacataaggtcacttactgaaccaccaagcaaagagtgaacag 173

                                                           
Query: 301 ggcttgacctaggccccctgcaaatatgcagcagaagtgcagcttggt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ggcttgacctaggccccctgcaaatatgcagcagaagtgcagcttggt 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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