BAC Information

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BAC

Clone NameMSMg01-436G01
Chromosome1 (Build37)
Map Location 182,619,397 - 182,619,898
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9
Downstream geneMixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436G01.T7 (MSMg01no436_g01.b1)MSMg01-436G01.TJ (MSMg01no436_g01.g1)
ACCAG527460AG527461
length739739
length of high quality
(start - end)
485 (53 - 537)559 (79 - 637)
definitionCHROMAT_FILE: MSMg01no436_g01.b1 PHD_FILE: MSMg01no436_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:26 2005CHROMAT_FILE: MSMg01no436_g01.g1 PHD_FILE: MSMg01no436_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGGCCTATCCCTAAACATGATAAAAGCAATCTACAGC
AAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGATTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCA
ACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATC
AAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCC
TAAACCTGATAAAAACAGCTTCAATGAAGTAGCTGAATATAAATTTAACT
CAAACAAGTCAATGGCCTTTCTGTACACAAAGGATAAACAGGCTGAGAAA
GAAATTAGGGAAACAACACCCTTCTCTATAGTCACAAATAATATAAAATA
CCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTCTGATAAGAACT
TCAAGTCTCTGAAGAAAGAATTTATAGAAGATCTCAGAAGTTGGAAAAAT
CTCCCATGCTCATGTATTGGCAGGATCAATATAGTATAAGTGGCTATCTT
GCCTATAACCATCTACAGATTCTATGTAATCCCCATCAAATTTCTAACTC
CTTTCCTTCACGAATTATATAGGGTAATGCTTCTTATTT
TACGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCTCTCACAGATTCATTAA
ATGACATAAAAAACACAATAGATGCTTCTAATATCAGTTGTTTTCAGAAT
AACGTAGAAATCCATGTTGCACATATCCAGAGTGGCCTGAGTCAGATGGG
AAACTTACACGCCTTTGCAGCCAACAACACGAACAGAGACTGAGCACAGG
ATCCTGGTACCCAGCTGCACACAGCCATGGTCTGAGGAGTCCTGGTCCTT
AACCCATGCTTCCAACACCAGATAACCTAGCTGCTGGAAAACCGGAGAAC
TGTACATCTCCAGATACGGCTTTTTAATACACTGTACTGCTTCTTCAACC
AGCATTGTGCTGACCAGCATTTATTTATTGTTCTTTTATTATCCAGATGC
AGTAGTGTTGCTTATATTTCCTGTTTATCAGCAAACATTTTTAACCGGAA
ACTCTCTGAACGTACTATCCCATGGAGGATAAACCACTGTTTTATGCATG
CATGAATTCTGCTCAGCACATGCAGACGACTCCTGTGACAGACAGAGAAC
ATGAAGAAGCACAGTCTTTCCATGCATGATGGTGGGAATCCCATCCGAGA
GTCACCGGTCCAGTGGAGTTAGTTGGCATTATATCTTGCGCTGCAAAATA
GACGTCATGAGTGTGAGAGTCCGAATCGTACGAACCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_g01.g1 MSMg01no436_g01.g1 CHROMAT_FILE:
MSMg01no436_g01.g1 PHD_FILE: MSMg01no436_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:26 2005
         (559 letters)



>mm_chr1_182619140_182620098
          Length = 959

 Score =  948 bits (490), Expect = 0.0
 Identities = 499/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 58  agttgttttcagaataacgtagaaatccatgttgcacatatccagagtggcctgagtcag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agttgttttcagaataacgtagaaatccatgttgcacatatccagagtggcctgagtcag 317

                                                                       
Query: 118 atgggaaacttacacgcctttgcagccaacaacacgaacagagactgagcacaggatcct 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 318 atgggaaacttacacgcctttgcagccaacaacacgaacagagactgagcacaggattct 377

                                                                       
Query: 178 ggtacccagctgcacacagccatggtctgaggagtcctggtccttaacccatgcttccaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtacccagctgcacacagccatggtctgaggagtcctggtccttaacccatgcttccaa 437

                                                                       
Query: 238 caccagataacctagctgctggaaaaccggagaactgtacatctccagatacggcttttt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caccagataacctagctgctggaaaaccggagaactgtacatctccagatacggcttttt 497

                                                                       
Query: 298 aatacactgtactgcttcttcaaccagcattgtgctgaccagcatttatttattgttctt 357
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatacactctactgcttcttcaaccagcattgtgctgaccagcatttatttattgttctt 557

                                                                       
Query: 358 ttattatccagatgcagtagtgttgcttatatttcctgtttatcagcaaacatttttaac 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttattatccagatgcagtagtgttgcttatatttcctgtttatcagcaaacatttttaac 617

                                                                       
Query: 418 cggaaactctctgaacgtactatcccatggaggataaaccactgttttatgcatgcatga 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cggaaactctctgaacgtactatcccatggaggataaaccactgttttatgcatgcatga 677

                                                                       
Query: 478 attctgctcagcacatgcagacgactcctgtgacagacagagaacatgaagaagcacagt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 678 attctgctcagcacatgcagacgactcctgtgacagacagagaacatgaagaagcacggt 737

                                 
Query: 538 ctttccatgcatgatggtggga 559
           ||||||||||||||||||||||
Sbjct: 738 ctttccatgcatgatggtggga 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)