NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTATGGCTTTACGATTCAAGAAAATCACAAATTAAGGCTTTCTC
AAATATATTTGGGATGTACTAGGTATGATGGTTAAAGCAGATTCCCTGAA
GAAAATAAATTCAACTAGGGAACAACCTTACTTCCTGGCATAAATCAAAG
TAAACTAGAGGACATCTTCTAAAGTTTACAGACAACAGTGAAAATGTATT
ACTATTATTTTCTTGCTGTTAAGTTTTATGAGTGTTTATCTTTTCAATGT
ACAATAAAGATTCATGGGGAGAAATGCTGTAAACAAGGCAGGTCTTTGTT
GTGGGACATGTTAAAACCAAACCAAACCAAACCAAACCAAACCAAACCAA
ACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAA
ACCAAACCAAAACTTACCGTGCTATATCCAGCTAGCTACTCTCTGCTGGG
CAGTCTCACTGACTCTAGGCCAACTCCAGGTGGCAGTGTCCCCAGCTCAG
GTTCGCCTGCCTCAGAGCTGCCTGTACCTTCTCAGCCATCTACCCCCGTA
GCGAGTTGTCACAAATCCCTTTAACCAGTATATCAAAACTCATGAAGCTT
ACATTTAAACAGACAGATTTATATATTAATAAAATCTTAAATCACAAGAT
GTCCACACAATACCTTCAGAGCCAGTTGATAATGATTGTAAATTGCCCAC
CTAGATAAGAA

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACCTGCATCCAAGTAGGGATAGGCT
GCAGTCATAAACACCCAAGACAGTTTATACAAGAAATAACCAGATGGTGA
AAGGCAAATGCAAGAGGATAAGTAACAGAAGCTAATATAATTTGGAACAA
TAAGAACCCAATTATTACACAGCAGCAAACCTTGGACACCCTAACACACA
TGAAAAGCAAGAATCTTTCTTAAACTCCCAACTTATAAAGATTATAAAAA
CCTTTAAAAAGGGATAGAAGTAACTCCCTTAAAGAAACATGGGGAAACAT
AGGCAAACAGAAGCACTAAAAGAAGAAATAAACAAAACCTTTAAAGAAAT
TCAGGAAAACACAATAAATCTGACAAAAGTGTCTAAGACCTAAAAATGGT
GATAGAAACAATTAAAAAAATTCACAAATGCAAAATCCAGGAAAGTGATC
AGGAATTACAGATGCAAGCATCACCAACAGAATACACAAGATAAAAAAGA
GAATTTCAGGCAAAGAAGATAGTGACACACAGTCAAACAAAAAAAGTATA
AAAAGTTTCTAACCCAAATCATCCAGGAAATTCATGACAGGATAGGGGTT
TTTTGGAGGAGAAATAAGGAAAGGAGATAATTATTTGAAATGAAAGTAAA
GAAAATATCCTATATTAAAAAATTCCCTAAGATAAAAGGAATAGGAGAAA
GTGTTGATTCTCT

Query= MSMg01no436_h21.b1 MSMg01no436_h21.b1 CHROMAT_FILE:
MSMg01no436_h21.b1 PHD_FILE: MSMg01no436_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:34 2005
         (581 letters)



>mm_chr1_105234709_105235689
          Length = 981

 Score =  878 bits (454), Expect = 0.0
 Identities = 510/558 (91%), Gaps = 45/558 (8%)
 Strand = Plus / Plus

                                                                       
Query: 24  gattcaagaaaatcacaaattaaggctttctcaaatatatttgggatgtactaggtatga 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gattcaagaaaatcacaaattaaggctttctcaaatatatttgggatgtactaggtatga 283

                                                                       
Query: 84  tggttaaagcagattccctgaagaaaataaattcaactagggaacaaccttacttcctgg 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tggttaaagcagattccctgaagaaaataaattcaactagggaacaaccttacttcctgg 343

                                                                       
Query: 144 cataaatcaaagtaaactagaggacatcttctaaagtttacagacaacagtgaaaatgta 203
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cataaatcaaagtaaattagaggacatcttctaaagtttacagacaacagtgaaaatgta 403

                                                                       
Query: 204 ttactattattttcttgctgttaagttttatgagtgtttatcttttcaatgtacaataaa 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttactattattttcttgctgttaagttttatgagtgtttatcttttcaatgtacaataaa 463

                                                                       
Query: 264 gattcatggggagaaatgctgtaaacaaggcaggtctttgttgtgggacatgttaaaacc 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gattcatggggagaaatgctgtaaacaaggcaggtctttgttgtgggacatgttaaaacc 523

                                                                       
Query: 324 aaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaacc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 524 aaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaa------------ 571

                                                                       
Query: 384 aaaccaaaccaaaccaaaccaaaccaaaccaaaacttaccgtgctatatccagctagcta 443
                                            |||||||||||||||||||||||||||
Sbjct: 572 ---------------------------------acttaccgtgctatatccagctagcta 598

                                                                       
Query: 444 ctctctgctgggcagtctcactgactctaggccaactccaggtggcagtgtccccagctc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 599 ctctctgctgggcagtctcactgactctaggccaactccaggtggcagtatccccagctc 658

                                                                       
Query: 504 aggttcgcctgcctcagagctgcctgtaccttctcagccatctacccccgtagcgagttg 563
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 659 aggttcgcctgcctcagagctgcctgtaccttctcagccatctaccaccgtagcgagttg 718

                             
Query: 564 tcacaaatccctttaacc 581
           ||||||||||||||||||
Sbjct: 719 tcacaaatccctttaacc 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)