BAC Information

Click to search

BAC

Clone NameMSMg01-436I02
Chromosome1 (Build37)
Map Location 9,909,416 - 9,909,892
singlet/doubletsinglet
Overlap gene6030422M02Rik
Upstream geneSntg1, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643
Downstream geneLOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436I02.T7 (MSMg01no436_i02.b1)MSMg01-436I02.TJ (MSMg01no436_i02.g1)
ACCAG527555AG527556
length749736
length of high quality
(start - end)
458 (54 - 511)502 (85 - 586)
definitionCHROMAT_FILE: MSMg01no436_i02.b1 PHD_FILE: MSMg01no436_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:35 2005CHROMAT_FILE: MSMg01no436_i02.g1 PHD_FILE: MSMg01no436_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTTGCATTTACTTTCAAGTTGGGCTGGATGGTGGTG
GTACATGAGACAGAGGAAGAGGCAGGCTATTCTATGTGAATTGGAGGCCA
GACTGGTCTACAGAGCAAGTTCTAGGATAGCCAGGGCTACAACACAGAGA
AACCCTGTCTCATAAGACCATTTAAAAAAAAAGGTAAATTCAAGTTCGGT
TTCTATTAATGCAGATTCTAAACTTCCCACTCTATTCAGATATAACCAGC
TTTCCAGTCTTTCTATTTAGCTATCAAAGCAAGTGAAAAGAATAGGACTT
CTCTCCATTTTGTAGTTACATAATGCTAAATTATGATGAAGCTGTCCAGG
GACACTGCTGGTAAGAAAGGTGGTATTTTCTGGGCAGTGATGGCACACAC
CTTTAATCTCAGCACTTGGGAGGTAGAGGCAGTCGGATTTCTGAGTTCGA
GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGTGCTACACAGA
GTAAGTCCTACACCATGTCAGTTAGGAGTATACAGTCTGGTCCTCTGTTT
CACTATGTTTCTATTGCGCTTATTAGAGGGCCTCCTTACAAAGGTTAACA
ACAGTTTGTTTTATTGGAAGGTTCTTATCTATTGTTACTAATTCCTGGTT
CTTTCTCTACCCTTTTGCCGCGCCGTTTACTTCCCTTTCTTTTTTCTTT
TGTGTGGTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCA
CTCTGGAAATCAGTCTGGCGGTTCCTCATAATATTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CTGGTAAGAAGGACACATGCTCCACTATCTTCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATCTACACAATGGAGTACTATTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTAACACTTCCCTAAGGAACTCACACCATATGTACTCC
TTGAAAAATGGATAATAGTCCCCAATCTAGGATTCTCTAAATATTATATA
CAATTTGCTATATTATTGTAACTTCAGAATAATGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_i02.b1 MSMg01no436_i02.b1 CHROMAT_FILE:
MSMg01no436_i02.b1 PHD_FILE: MSMg01no436_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:35 2005
         (458 letters)



>mm_chr1_9909129_9909986
          Length = 858

 Score =  791 bits (409), Expect = 0.0
 Identities = 449/477 (94%), Gaps = 23/477 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttgcatttactttcaagttgggctggatggtggtggtacatgagacagagga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaattcacttgcatttaatttcaagttgggctggatggtggtggtacatgagacagagga 705

                                                                       
Query: 65  agaggcaggctattctatgtgaattggaggccagactggtctacagagcaagttctagga 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 704 agaggcaggctattctatgtgaattggaggccagactggtatacagagcaagttctagga 645

                                                                       
Query: 125 tagccagggctacaacacagagaaaccctgtctcataagaccatt--------------- 169
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 644 tagccagggctacaacacagagaaaccctgtctcataagaccattaaaaaaaaaaaaaaa 585

                                                                       
Query: 170 --------taaaaaaaaaggtaaattcaagttcggtttctattaatgcagattctaaact 221
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaaaaaaaaaaaaaaaaaggtaaattcaagttcggtttctattaatgcagattctaaact 525

                                                                       
Query: 222 tcccactctattcagatataaccagctttccagtctttctatttagctatcaaagcaagt 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcccactctattcagatataaccagctttccagtctttctatttagctatcaaagcaagt 465

                                                                       
Query: 282 gaaaagaataggacttctctccattttgtagttacataatgctaaattatgatgaagctg 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaaaagaataggacttctctccattttgtagttacataatgctaaattatgatgaagctg 405

                                                                       
Query: 342 tccagggacactgctggtaagaaaggtggtattttctgggcagtgatggcacacaccttt 401
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 404 tccagggacactgctggtaagaaaggtggtatttgctgggcagtgatggcgcacaccttt 345

                                                                    
Query: 402 aatctcagcacttgggaggtagaggcagtcggatttctgagttcgaggccagcctgg 458
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatctcagcacttgggaggtagaggcagtcggatttctgagttcgaggccagcctgg 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)