TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCATTTCTGAGACCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTGTCCCCTGTGTCCATATCTTCGAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGATTTAAGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGATTTTAGCTCCCTTGTCGAAGATGAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGTAGTTTTTATTCACATTGCT
CTGTAGTAAAGCTTTAAGGCAGGCATGGTGATTCACCCCAGGTTCTTTTA
TCCCTGAGAAAAGTTTTTGTTTTCCTAGGATTTTTGTTATTCCCGAAGAA
TTCGCN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCTCCCACACAAAGCCCCCACCC
CCATGTTTCAAGCCTAGGGAATTAGCCTGCTACCCTCTCAAGGAGAGTGC
ATTATTCATCCCACAGGTAAAGAGAGATGCTCTGAAGGGACTAGATATTG
CAGCCTTCCTAACTTCCACATTCCTTGCTGCCCTTAACTACAGCTAAGTA
CCTATTTGCTAACATTTGGAGGCATTGAAACTTCGGGTCTACAGAAAGGA
ACTGGTATGATAAGACTTGCAGGCATTATCAAAGTTCTGGGATCTTAGAA
AATCTTCCCAGGCATGGCCCCTGACTCATAACGTTCTTAACTCTCTAAGA
TGGTAAGGAAGTGTCCTGGCATGTGTTTGTATAGCTCTTCTCCCTGCTAG
CTCAGGATTGCTAGGACTACGATTAATTTCTCTACCCTAAGTTTGTGAAA
TAAATAATGATAGAGCATGAGACTCTTGAAGGACAAAGGGAAAATATTTT
AGATAATAAAAAATATAGGCATATACTGCACAGTGACAGAACCTATGATT
ACAGCGATCCTATAAGATTATAGTACAGTTTTGTTATGGTTTGGATTGGA
TATGAAGTATCCCCCCAAAAGGTTGTGTGTTATAAGTTTGGCCCCCTTAC
TAAAAAATCCTGATTTACCCCGAGATGAACATTTGTCTGTGTCCTACCAC
TGAAATAATGG

Query= MSMg01no436_l19.g1 MSMg01no436_l19.g1 CHROMAT_FILE:
MSMg01no436_l19.g1 PHD_FILE: MSMg01no436_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:54 2005
         (541 letters)



>mm_chr1_180325749_180326689
          Length = 941

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctcccacacaaagcccccacccccatgtttcaagcctagggaattagcctgctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttctcccacacaaagcccccacccccatgtttcaagcctagggaattagcctgctacc 682

                                                                       
Query: 61  ctctcaaggagagtgcattattcatcccacaggtaaagagagatgctctgaagggactag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctcaaggagagtgcattattcatcccacaggtaaagagagatgctctgaagggactag 622

                                                                       
Query: 121 atattgcagccttcctaacttccacattccttgctgcccttaactacagctaagtaccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atattgcagccttcctaacttccacattccttgctgcccttaactacagctaagtaccta 562

                                                                       
Query: 181 tttgctaacatttggaggcattgaaacttcgggtctacagaaaggaactggtatgataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgctaacatttggaggcattgaaacttcgggtctacagaaaggaactggtatgataag 502

                                                                       
Query: 241 acttgcaggcattatcaaagttctgggatcttagaaaatcttcccaggcatggcccctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttgcaggcattatcaaagttctgggatcttagaaaatcttcccaggcatggcccctga 442

                                                                       
Query: 301 ctcataacgttcttaactctctaagatggtaaggaagtgtcctggcatgtgtttgtatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcataacgttcttaactctctaagatggtaaggaagtgtcctggcatgtgtttgtatag 382

                                                                       
Query: 361 ctcttctccctgctagctcaggattgctaggactacgattaatttctctaccctaagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttctccctgctagctcaggattgctaggactacgattaatttctctaccctaagttt 322

                                                                       
Query: 421 gtgaaataaataatgatagagcatgagactcttgaaggacaaagggaaaatattttagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaaataaataatgatagagcatgagactcttgaaggacaaagggaaaatattttagat 262

                                                                       
Query: 481 aataaaaaatataggcatatactgcacagtgacagaacctatgattacagcgatcctata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaaaatataggcatatactgcacagtgacagaacctatgattacagcgatcctata 202

            
Query: 541 a 541
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)