BAC Information

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BAC

Clone NameMSMg01-436M10
Chromosome1 (Build37)
Map Location 62,870,201 - 62,870,344
singlet/doubletsinglet
Overlap geneLOC100043070
Upstream genePard3b, LOC667592, Nrp2
Downstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436M10.T7 (MSMg01no436_m10.b1)MSMg01-436M10.TJ (MSMg01no436_m10.g1)
ACCAG527763AG527764
length783771
length of high quality
(start - end)
271 (50 - 320)141 (171 - 311)
definitionCHROMAT_FILE: MSMg01no436_m10.b1 PHD_FILE: MSMg01no436_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:56 2005CHROMAT_FILE: MSMg01no436_m10.g1 PHD_FILE: MSMg01no436_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGCG
CGGAATTCTTTGTTCTGTCATGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCTTTTTTTTCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACATGGAGATCAGTATGGATCGATTC
GCATTCTTCTACACGATAACAATCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTCTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAATATCAT
GTGTACCATATTTGTGTGTTTTTATTTTTTGTGACTTTTCTTCCATTTCT
TTGATCTACTATGTCTGTCCTTTCACCATTACCCACGTCTTTTCCTTCCC
TTTTGCCTCTTTTTTTTTCGCTTTTACTATTGCTTTTTTCCCTCTTTCCT
CTTCATCCTATCCTTCTTTCCTTCGTTAAATTTTCTCTTTCCTTTTCTCC
ACCCTTTTTTTCTTCCACTTACTATTTTTCTTT
GCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCTGCCTGTCTTTGGAGCAACTGTGTTTAAAC
CCCGTGGGAGTTCAAAGACCTCGCCTAAGGTTTTGAAGTTCCCAGTCCTC
TGCTTTCCCTTGAACTTAGACCTGTTGAGAGGTTAAAAAAAAGAAAACAG
TGCTGTTGGAATCTTAGAGACTAGGGTTCAAGATTCAGTTCTGCCTCTTG
TGTAACCCTGGGAGGCTGTGGCTCTCTTGGCTGGGCTTGCTGCTCTGTAA
GCTGGGATTTGTTCTGTGTGAACTCTGATCTCTGACTTCCAGGGATGTGT
GGGTGTCTGTGCTGTACAAGCCAGAGAGGAGAAAGCATCACAGGTGCTGT
ATAGAGGCCGCCGAGAGTCTGGACAGGTGATGTCCACGAGCCCATACAAG
GAGATAGATACTACTGGTTTCTCTTTAACTAGAGTATTTTAGGTTAAATA
ATATATTCAAATGATAATTCTGTTGAAATATCTGAAATGTTGCCAGAGTT
ACCCAATAAAATTGGTCCGTGGACCTATGTTTGTTGCCCTACTCTTTTCT
TATTCCTTATATTGTTGACTAACTCAGATCCTTACTTCCTCATCAATATT
TTATTTTTTTTGTTGCTGCACAATATTAACATTTTCCTTTTCATCCACTT
ACCTGCTCCTATTGCCTATATAGTATCCCTCTGCTGTCTCTTGCTCTTCT
TTTTACTTTATTTTTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_m10.g1 MSMg01no436_m10.g1 CHROMAT_FILE:
MSMg01no436_m10.g1 PHD_FILE: MSMg01no436_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:57 2005
         (141 letters)



>mm_chr1_62870001_62870544
          Length = 544

 Score =  232 bits (120), Expect = 6e-66
 Identities = 137/144 (95%), Gaps = 3/144 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgttgagaggttaaaaaaaagaaaacagtgctgttggaatcttagagactagggttca 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgttgagagggtaaaaaaaagaaaacagtgctgttggaatcttagagactagggttca 260

                                                                       
Query: 61  agattcagttctgcctcttgt---gtaaccctgggaggctgtggctctcttggctgggct 117
           |||||||||||||||||||||   |||| |||| || |||||||||||||||||||||||
Sbjct: 261 agattcagttctgcctcttgttgtgtaagcctgtgaagctgtggctctcttggctgggct 320

                                   
Query: 118 tgctgctctgtaagctgggatttg 141
           ||||||||||||||||||||||||
Sbjct: 321 tgctgctctgtaagctgggatttg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 544
Length adjustment: 8
Effective length of query: 133
Effective length of database: 536
Effective search space:    71288
Effective search space used:    71288
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)