BAC Information

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BAC

Clone NameMSMg01-436P17
Chromosome1 (Build37)
Map Location 21,495,666 - 21,496,209
singlet/doubletsinglet
Overlap geneKcnq5
Upstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076
Downstream geneD1Mgi28, LOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436P17.T7 (MSMg01no436_p17.b1)MSMg01-436P17.TJ (MSMg01no436_p17.g1)
ACCAG527921AG527922
length782738
length of high quality
(start - end)
358 (46 - 403)545 (58 - 602)
definitionCHROMAT_FILE: MSMg01no436_p17.b1 PHD_FILE: MSMg01no436_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:12 2005CHROMAT_FILE: MSMg01no436_p17.g1 PHD_FILE: MSMg01no436_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTATCCCCCTTACCCCATAAAAACCCCTAGCATTCAAG
CCTCGTGGCCCACATCCGTTATCTCCTGTGTGGGATACATGTCAGTCCGG
AGCTCCGTAATTAAACGTCCTCATGTAATTACATCAAGAGATGGTCCTTC
GTGATTTTTTGGGTGTACGCCGAATCGGGAATTGGGTGGGGATTTCCCCA
CTAGGTTCTTTCAACAGAAGAGGGCATCTGATGTCATGAGCAGCCAAGTG
GTTGCTGTGAATTGAAATCCAGACTTCTGGATGAAAGCTAGTGCTTTGAT
ACCTCTTTAGGAGTAGATGCATAGCACCACACATTCTGAAGGGCCTCTCA
GTTAGCTGGTAAACCAGATATTAACACAGAGTGTAGCAAAGACATGGAGA
TCATAGAGTCTTACTGGTTATTGGGGTGAAGTCAGTAAAGAAGTGGGCAG
TTATAATGCAATATGTGGGGGGGACCCAAGTGGGTTGAATTTTTAACCCT
TACATGGCTTTTGTTCCCCTTAAATTCCCTTCCCAGGAAAAAAGATGGTT
ATTCCTTTTTCTGGGTTCTCCTCCCCGAAAAAAAAAGGCTCTGGAGTTCT
CCTCCCAATTCCTTTGTACTTAATCTTGTTCTCCTAGATTGGTGGTCGAG
TTTTTCTTATTATGTCTCTATCCATTTGCGGCGGGCCTCTCCGAAAAATA
TAACGCGTCCTCTTTGGTGTCTTTNATCACCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTGGAGGTTGCTGTCAATCTGTTGAAGCTTATGTGATTCAAA
CTTGTACAGGTAAAAGTGCAGAGTGTTCAAGGAACCAGAACTAAAGAGAC
AGGAAAGTCGTGTTCTGGGCCTTTTAGCTCTGCAGTCCTGCTACGTTCTT
GTAGGGGAAACTGAGCACAGAGTTCTGTCTACTCAAAACGATGCACATGA
ACGCTTCAGAAATAGTTTTGAGAAATAAAATATATTAGTTGTGTGACTTA
TGGCTGTCTCAACCTGTTTCTTGCAGATACCATTGTTCTCATCGCTTCAA
TAGCAGTTGTCTCTGCAAAAACTCAGGGTAATATTTTCGCCACGTCAGCG
CTCAGAAGTCTCCGGTTCCTACAGATCCTGCGTATGGTGCGCATGGACAG
AAGGGGAGGGACCTGGAAGCTGCTCGGCTCTGTGGTTTATGCTCACAGCA
AGGTAAAAGTGCGCTCTCTGCACCGTATAAGAAAAATTTTGAAATGTTCT
GCTGATTGCAATGTTTAATAAACTTGACACAGGCAGTTGCTCCAGATTGT
GATTCAAGCTATTTGAAGCCCTGATGCGTAATGCATTACTTTAAAGCCTT
TGCTATATTTCCTAGAAATAGGAGCATGATTTGACCATATGTACAGCTTA
TGTTTCCATTTCCAAAAAAAAATTGTCTCCTCTAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_p17.g1 MSMg01no436_p17.g1 CHROMAT_FILE:
MSMg01no436_p17.g1 PHD_FILE: MSMg01no436_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:12 2005
         (545 letters)



>mm_chr1_21495466_21496410
          Length = 945

 Score =  998 bits (516), Expect = 0.0
 Identities = 537/544 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaggttgctgtcaatctgttgaagcttatgtgattcaaacttgtacaggtaaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctggaggttgctgtcaatctgttgaagcttatgtgattcaaacttgtacaggtaaaagt 685

                                                                       
Query: 61  gcagagtgttcaaggaaccagaactaaagagacaggaaagtcgtgttctgggccttttag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcagagtgttcaaggaaccagagctaaagagacaggaaagtcgtgttctgggccttttag 625

                                                                       
Query: 121 ctctgcagtcctgctacgttcttgtaggggaaactgagcacagagttctgtctactcaaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 624 ctctgcagtcctgctacgttctggtaggggaaactgagcacagagttctgtttactcaaa 565

                                                                       
Query: 181 acgatgcacatgaacgcttcagaaatagttttgagaaataaaatatattagttgtgtgac 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acgacgcacatgaacgcttcagaaatagttttgagaaataaaatatattagttgtgtgac 505

                                                                       
Query: 241 ttatggctgtctcaacctgtttcttgcagataccattgttctcatcgcttcaatagcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttatggctgtctcaacctgtttcttgcagataccattgttctcatcgcttcaatagcagt 445

                                                                       
Query: 301 tgtctctgcaaaaactcagggtaatattttcgccacgtcagcgctcagaagtctccggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtctctgcaaaaactcagggtaatattttcgccacgtcagcgctcagaagtctccggtt 385

                                                                       
Query: 361 cctacagatcctgcgtatggtgcgcatggacagaaggggagggacctggaagctgctcgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctacagatcctgcgtatggtgcgcatggacagaaggggagggacctggaagctgctcgg 325

                                                                       
Query: 421 ctctgtggtttatgctcacagcaaggtaaaagtgcgctctctgcaccgtataagaaaaat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 324 ctctgtggtttatgctcacagcaaggtaaaagtgcgctctctgcaccgtataggaaaatt 265

                                                                       
Query: 481 tttgaaatgttctgctgattgcaatgtttaataaacttgacacaggcagttgctccagat 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgaaatgttctgttgattgcaatgtttaataaacttgacacaggcagttgctccagat 205

               
Query: 541 tgtg 544
           ||||
Sbjct: 204 tgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)