NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGATGCCTCCTCAATATAATGCCGTCATCAGAGGATAGAAACC
ACAATCTCTGTGTGTGCCAGACTGACACATTTTAATATGCATTGATTTAT
TTTTATTCCTTGTGGTAGCATTTGTAAGAATTATTCTCTACATATTATAC
GTATTCTTCATCCCAAATTCCACCCTACATTTGTTCTGGATATTGAAGAA
TACATCATATGTAATCTTGAATCATGGACAGAGGTGACTAGAAACACAGC
AGAAGTTCATTATACATGCATTAAAATAAAAATCCCAGTGCTCAAAAATT
AGCATGCTACTACATTAAACATCATCAAATGTTTAAAGTCCTCAGACATA
AGAAGACAACAACCATTAATATAATATGGGGCCATTAATAATTTGTATCT
TTTAAGTGGTGTTACCATCTTACAACCTTCATTTCACCATCTTGTCAAAA
GATATATTATAAAATTTCTCAATTAGAAATACTGGACAGATCCTTTTTAT
AAATTCCCTCACAGCTACCACAAATCCTATTATATTTTCTAAGTAGNTGT
AACAGAAAGATTGAAACACAGAAGAAACTGGGAACCATGATTAAGCACTG
GGCTGTGCCAGACNCATGATATGGAGAATGTATAATAATGAAAAAAACTT
TTTTCACGGAAATTATTTTCTACTCCCTAACCCTCTTTGTATTTTCCCGC
GGTTAAATAAAACTTCT

GCAGTGGTAGGCTGGCGCCGCCTGGTCTCGCACGCTTCGGGAGCCATAGC
AGGTCTCGCGAATCTTCTTAAACATAGAGTTTGACACGAGAAGAATAAAC
AGTCTTGATTACAGACATGACCACTCCCAGATTNGAATGAGTACNTATTC
TTAGATAGNNGAATAATGGTTGGTAAATTTATTAAAGATCCGATCCCAAA
GGGATTTGGTGGGGGGGGGGTTTTTTAAAAAGGTTTCCCGGAAAACCCCG
GGGGCCGGAACCCCCTGGAAACAGGGGGGAAAAAATCTTTTTTCCCCCCC
CCAAGGGGGAAAAAAGGGGGGGCCCCCCCCCGGGGGGGTTTTTTTTTTCC
CCCCAAAACCCCCCGGGGTTTTTTTTATTTTTTAAAAACCCCCCCCCCCC
CCCCCCACAAAAAATAAAAAAAACACATTCTCCCTCCTTGAAAAAAATTT
TTTGGGGGGGGGGAGGGGGGGGCCCCCCCACCACATAACCCGGCGTTCCT
TAATATATCTACACATCCCCCCCCCCCCCCCCCCCCCCACAAAAACAAAC
CCCCCTCTCCCAAACCNCCCCCCCCCCCTCCTACCTCTTTTCATAACACC
AACCCCCCCTCCCCCCCCCCAAAAATCAAAAACCCCCCCCCCTACCCCCC
TTTCCCCCCCCCCCCCCCCACCCCTTCTTCCTTTTCTTTTTCTTTCTTTT
GT

Query= MSMg01no437_b23.b1 MSMg01no437_b23.b1 CHROMAT_FILE:
MSMg01no437_b23.b1 PHD_FILE: MSMg01no437_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:23 2005
         (540 letters)



>mm_chr1_144795796_144796735
          Length = 940

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%), Gaps = 2/538 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggatgcc-tcctcaatataatgccgtcatcagaggatagaaaccacaatctc 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggatgccat-ctcaatataatgccgtcatcagaggatagaaaccacaatctc 262

                                                                       
Query: 63  tgtgtgtgccagactgacacattttaatatgcattgatttatttttattccttgtggtag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtgtgtgccagactgacacattttaatatgcattgatttatttttattccttgtggtag 322

                                                                       
Query: 123 catttgtaagaattattctctacatattatacgtattcttcatcccaaattccaccctac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catttgtaagaattattctctacatattatacgtattcttcatcccaaattccaccctac 382

                                                                       
Query: 183 atttgttctggatattgaagaatacatcatatgtaatcttgaatcatggacagaggtgac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atttgttctggatattgaagaatacatcatatgtaatcttgaatcatggacagaggtgac 442

                                                                       
Query: 243 tagaaacacagcagaagttcattatacatgcattaaaataaaaatcccagtgctcaaaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tagaaacacagcagaagttcattatacatgcattaaaataaaaatcccagtgctcaaaaa 502

                                                                       
Query: 303 ttagcatgctactacattaaacatcatcaaatgtttaaagtcctcagacataagaagaca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttagcatgctactacattaaacatcatcaaatgtttaaagtcctcagacataagaagaca 562

                                                                       
Query: 363 acaaccattaatataatatggggccattaataatttgtatcttttaagtggtgttaccat 422
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acaaacattaatctaatatggggccattaataatttgtatcttttaagtggtgttaccat 622

                                                                       
Query: 423 cttacaaccttcatttcaccatcttgtcaaaagatatattataaaatttctcaattagaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttacaaccttcatttcaccatcttgtcaaaagatatattataaaatttctcaattagaa 682

                                                                     
Query: 483 atactggacagatcctttttataaattccctcacagctaccacaaatcctattatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atactggacagatcctttttataaattccctcacagctaccacaaatcctattatatt 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)