BAC Information

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BAC

Clone NameMSMg01-437B24
Chromosome1 (Build37)
Map Location 115,436,047 - 115,436,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437B24.T7 (MSMg01no437_b24.b1)MSMg01-437B24.TJ (MSMg01no437_b24.g1)
ACCAG528031AG528032
length797791
length of high quality
(start - end)
421 (71 - 491)342 (76 - 417)
definitionCHROMAT_FILE: MSMg01no437_b24.b1 PHD_FILE: MSMg01no437_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:23 2005CHROMAT_FILE: MSMg01no437_b24.g1 PHD_FILE: MSMg01no437_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAGGACCGCGGG
AANCNACAAGATTTCCCGGATAATATGAATACTTCAGAGGCAACAAGACT
GGGCAAAGTGTTGGCTACTGTACTTGCTAACAATGGGACTCTGAGAAAGG
TAATATACCACGCCTGACTTAGTCAGTGTTCTTCTGTGAAGAAACACCCT
GAGACCTAGCCCAAGAGAGCTGCATTTGTCAATCTTGATCATCAACTTGA
TTGGATATGGAATTAATTAAAAGTTATGTCTCTTTGAGGATCTGCAAAGA
CATTTCCAGGAAGGATTAACTGACAAGGATGAAACCCTTTCTTGATATGA
GAACCCAGATGGTCTAGATTTACAACCTGTTCTGTGACTCCACATGTTTC
CACCACACCTTAAGCACCAGAAGGGAACAAATTCAGTAGCTGAGCAGCTG
AGAAACTATTGGATTCTCATCCTCTACAGTGTTCAACTGGCCAAGTTGTA
TAGTGTGAGCCAGCCTAATCAGTATCCTTTCAATATACATTTGTCCTGTC
ACTTCTACTCCCCTACGGATCCTGATTCTAAAGAAGCCCCTTGGCAAAAG
GGTTCTTGGCGGGGTTTGTTTTGTTTTGGTTTGGCACCGGAACGGAGGGG
AAAGGGACAAAACAACCTCTGGGTTGTTTAATACAAATCCTCTTGACCCC
CAAAGTTCCTATTTCCTTTTTTTCCCAAAAATTTTTTTTGGTGTTTTATA
ATCTTTTCCCCCCCTACATACTTTTTCTTTTTTTCCTGGTAATAGGC
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTA
TTAATGAGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATA
TATATTGGATATTAGTCCCCTATCTGATTTGGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTA
CAGAAGCTTTGGAATTTTATGATGTCCCATTTACCGATTCTCAATCTTAC
AGCAAAAGCCACTGCTGTTATATTCAGGAATTTTTCCCCTGTAACCATAT
CTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGTGAAGTTCCTCGACACACTTAGATTTGACCTTAGTACAAGGAGA
TAGAAATGGATCAATTCGCATTCTTCTACATAATAACCATAAGTGGTGTC
AGCATCATTTGTTGAATATGTTGTTTTTCCTCCACTGGTATGTTTTAGAT
TAAGTGACTTTAGGTGTGTGAGTTCATTTCTTGGCTCCTCTATTCCTGTT
CTTTGTGAATATTTGCTTGCTCTATCACCCGTTTCTTTGCGCTTTTTTTA
TTCTTTTCTGCTCTGCACTCCCACCTTTTCTGTCTTTCTTCAGGTTTTTA
CCCTCTCATTTGCTGTTTCTTCTCTCGAGATCACAATGTCTTTTCTTTCT
CCGTCCTTCTTTTTTTCTCCCCTTTTTTTTTTTTGTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_b24.b1 MSMg01no437_b24.b1 CHROMAT_FILE:
MSMg01no437_b24.b1 PHD_FILE: MSMg01no437_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:23 2005
         (421 letters)



>mm_chr1_115435718_115436538
          Length = 821

 Score =  518 bits (268), Expect = e-151
 Identities = 286/292 (97%)
 Strand = Plus / Plus

                                                                       
Query: 130 tgagacctagcccaagagagctgcatttgtcaatcttgatcatcaacttgattggatatg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgagacctagcccaagagagctgcatttgtcaatcttgatcatcaacttgattggatatg 389

                                                                       
Query: 190 gaattaattaaaagttatgtctctttgaggatctgcaaagacatttccaggaaggattaa 249
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattaattaaatgttatgtctctttgaggatctgcaaagacatttccaggaaggattaa 449

                                                                       
Query: 250 ctgacaaggatgaaaccctttcttgatatgagaacccagatggtctagatttacaacctg 309
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 450 ctgacaaggatgaaacccattcttgatatgagaacccagatggtctagatttacaatctg 509

                                                                       
Query: 310 ttctgtgactccacatgtttccaccacaccttaagcaccagaagggaacaaattcagtag 369
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttctgtgactccccttgtttccaccacaccttaagcaccagaagggaacaaattcagtag 569

                                                               
Query: 370 ctgagcagctgagaaactattggattctcatcctctacagtgttcaactggc 421
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 570 ctgagcagctgagaaactatttgattctcatcctctacagtgttcaactggc 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)