BAC Information

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BAC

Clone NameMSMg01-437D06
Chromosome1 (Build37)
Map Location 187,007,920 - 187,008,352
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437D06.T7 (MSMg01no437_d06.b1)MSMg01-437D06.TJ (MSMg01no437_d06.g1)
ACCAG528091AG528092
length778771
length of high quality
(start - end)
274 (52 - 325)430 (83 - 512)
definitionCHROMAT_FILE: MSMg01no437_d06.b1 PHD_FILE: MSMg01no437_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:30 2005CHROMAT_FILE: MSMg01no437_d06.g1 PHD_FILE: MSMg01no437_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAAAAACTCTCAAACACCGTGTATAATTCCAGGTGCGG
GGGAAGGCCCGCATCCCCCGAGCCAGCTGCTTAGAAAGACTAACCATATG
GGCCAGCTCTTTGTTTCTGAGAGACCCTAACTCCTTGAATGAGGTGAAAG
AGGCATGGAAGATGATCCCCACCATCAACCTAGGACTTCCACATGCACAC
ATAGATGCATGCCCACACATGCAAATATGCACACACACACACACACACAC
ACACACACACACACACACACACACTTTCTTTTTTTCGGAAATGAGAACGC
AAAACAGGCTGTATACTACCTCTGGTAGTCCACGTTTCCACTCTCTCGAT
ACTTGCTACCAAACTTCATGCTTGCTCTAATCTATTATATGGTTCTGTGC
CTCCCTGACTCCCAAAGGTGAGCATAGCTTTGCTTTCCTTGCCTATATTT
TTTTTATGAATTGCCTGCGCTTACCTTTCCCCCCTTCCTTTATCTTGTCC
GCACCCACCTTCCATACCTTTTTTTGTAACGCGTGTCCCCACCCCGGTTC
ACTCACGGCTGTTATACCCTGCTGCTTTTCTGGATTGTCTTTGCGCTCAT
TTTTTACCGCTTACCTTCTTTTACCCTTTCTATCTTTGGAATATCCCGTA
CCTGTTTCACTGTCCATCATTCGCGGTTTCGTGGTATCTATTCTTCCTTG
CTACTTTTCTCTCCGGTTACGAATCTCT
TTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAGAGCGTTCCCCTG
TCTGCCGGGCAACATTGCAAGAGGCAGCATTCCCGGAAGCTCCCTGCTTC
AGATGATCCCAGACCTCACGTGACCTGGCCACCACATGTCTGGAAGTGTT
ATGTCTTTCCAGGCTATGAATCCTCCTAGCATAGAGCTCACTGCCAGCCT
CCTGTCTAAGAAGCTGCTGCTGTAAGCAATTAGCCTGAGTAACATCAGGC
AAGGCAGTTTTGTCCAGGTCATGGGCCCAAACTAGATGGACAGCAGAGGT
ACCCAAGGAAGGTGTATGCCCCACCAAACAATGTTTTCTTGGATGGGGAC
ATACCACACCCAGCTTAGCCAAAATGCTCAGAAAGTCAGGAATGAAAGGA
CAGTGGCACTTGCTTGCCTGAGTTTATGAATGGTGCATGTTTTGTTATGA
TAGCTATTTCAGCTTATCTGGTCTGGATTCTGAGACTAGCATTCGAACAT
CATAGTACCTGTGTGTTGCTTATTACAAACTTACTCCTAATCGTATGTTC
TTATACATGTTCATGAAAACCACCTTTTGGCTTTTTTAGCGATCTTACAT
GACGCCTCTCTTCCAATCTCTCTAAAGTTTTTTCTTGTTGTAAAATTTAT
TCATCCCACCTCGCCACCTCATTCTTATTCCCCTTCTTTTTTTCTTCCTT
CTCGCCTTTTTACTTATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_d06.g1 MSMg01no437_d06.g1 CHROMAT_FILE:
MSMg01no437_d06.g1 PHD_FILE: MSMg01no437_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:30 2005
         (430 letters)



>mm_chr1_187007723_187008552
          Length = 830

 Score =  814 bits (421), Expect = 0.0
 Identities = 429/433 (99%), Gaps = 3/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaga---gcgttcccctgtctgccgggcaacattgcaagaggcagcattcccggaag 57
           |||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 198 agaaagagctgcgttcccctgtctgcccggcaacattgcaagaggcagcattcccggaag 257

                                                                       
Query: 58  ctccctgcttcagatgatcccagacctcacgtgacctggccaccacatgtctggaagtgt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctccctgcttcagatgatcccagacctcacgtgacctggccaccacatgtctggaagtgt 317

                                                                       
Query: 118 tatgtctttccaggctatgaatcctcctagcatagagctcactgccagcctcctgtctaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tatgtctttccaggctatgaatcctcctagcatagagctcactgccagcctcctgtctaa 377

                                                                       
Query: 178 gaagctgctgctgtaagcaattagcctgagtaacatcaggcaaggcagttttgtccaggt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaagctgctgctgtaagcaattagcctgagtaacatcaggcaaggcagttttgtccaggt 437

                                                                       
Query: 238 catgggcccaaactagatggacagcagaggtacccaaggaaggtgtatgccccaccaaac 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 catgggcccaaactagatggacagcagaggtacccaaggaaggtgtatgccccaccaaac 497

                                                                       
Query: 298 aatgttttcttggatggggacataccacacccagcttagccaaaatgctcagaaagtcag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatgttttcttggatggggacataccacacccagcttagccaaaatgctcagaaagtcag 557

                                                                       
Query: 358 gaatgaaaggacagtggcacttgcttgcctgagtttatgaatggtgcatgttttgttatg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaatgaaaggacagtggcacttgcttgcctgagtttatgaatggtgcatgttttgttatg 617

                        
Query: 418 atagctatttcag 430
           |||||||||||||
Sbjct: 618 atagctatttcag 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)