BAC Information

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BAC

Clone NameMSMg01-437D19
Chromosome1 (Build37)
Map Location 13,745,987 - 13,746,355
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9
Downstream geneLOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391, Msc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437D19.T7 (MSMg01no437_d19.b1)MSMg01-437D19.TJ (MSMg01no437_d19.g1)
ACCAG528117AG528118
length769766
length of high quality
(start - end)
691 (42 - 732)558 (70 - 627)
definitionCHROMAT_FILE: MSMg01no437_d19.b1 PHD_FILE: MSMg01no437_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:33 2005CHROMAT_FILE: MSMg01no437_d19.g1 PHD_FILE: MSMg01no437_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCTACAATGATGGACTACATAACCTGAAGCTGTGAGATAAAATAAGCCC
TTTCTCTTGTAAGGTGGACTTTTGTCAAGGTGTTTTTTATCACAGAAACA
ATGAAATGACAACCACTGAAATACAAGTGGACTCCTTTGGCCAATCTCAA
AAGGTGTCTTTATCAATGTTTTTACTTTTCAGTCAGCATTGGTCAGCTAC
ATGTAACATGAACCCCCAGATAGTGGTTGCTTAAACAAGGTGATGTTCTT
GTAAATGAAGACAAGTAGTAGCTGCTTCATAGTTGTTGTTCAGTTTCAAC
ATTCTACCTATGTCAATATGCCACCTCCCTTTTCAAGGTCACCTCATAAA
GTATGGTACTTGCTGGAGCTCCAGCTACCCTGCATATTTCATTAAAGCCA
CAGGAGTGAAGCAGGGGTGGGAGGACAGTGAGAATGCATTCTCTTCCTTC
TAATGACTCTTCCCAGAAGTCCCATATGAGACTGCTACTTGTATTTCTTT
GGCTAAAAACTAGATGACTAAGCCTTCGTTTTGCTTCTTAAATTTACACC
ACAGTGTGCTGAGCTTAAAGTGTTATCATTCTAGAACTGATGTTGGAGCA
GGATGAAAAGTGGTGTCTGCTCCAACCCTTATTCTAAATCATGGTAGAAT
ATTCCTTCCTTTCAGAATATATGACACTTGAAAGACAAAATAGTTAGGTG
TGTGGCTCTGGAACCAAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTTAGATTTGGACCCATTTTTAAATTGGA
GTTTGTTGATTGATTCTTGAGTTCCTTATATATTTTGGATATCAGGCTCC
TGTCAGATGTGGAGTTAGTGAAAATCTTTTCCCATTTTCTGGGTTGTCAT
CTTGTCCTATTGATAGTGTCTTTTGCTTTACAGAATGTTTCAGTTTCATG
AGGTCCCATGCATTAATTTCTGGTCTTAGTGCCTGTTTAATGGTGTTCTG
TTCAGGAACTGTCTTTTGTGCCAATACATTCAAAACTATTCCCTACTTTC
TCTTCTATCAGGTTAAGTGTATCTAATTTTATTGAGGACTTTGATATATT
TGGGTTTGAGTTTCATGCAGGATGAATAATAGATATGGACCTATTTGCAT
TATTCTACATGTAGATATCCAGTTAGTGCTGGTGCTCATTTTGTTGAAGA
TGCTTTCTTTTTTTCCATTGTATGTTTCTGGATTCTTTAATAGAAAGCTT
TTATTTCTACGTAAAATATGGCAAAGAGTTTTGCTGGGTATATTAGTCTA
TGTTAGTTTTTATGTTTTTTTTTCTTCCAGGGTTGTAATGATTGATCCAC
GCTCTTTTGGCTTTTAGAGTTTTCCCTGAAAAATAATCTGTTATCTCGGA
GCACTCTCCTTTTACATCCGCTTGTCACCTGCTCTTTTTCTCGTGGTTTT
TAATCTTTCTGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_d19.b1 MSMg01no437_d19.b1 CHROMAT_FILE:
MSMg01no437_d19.b1 PHD_FILE: MSMg01no437_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:33 2005
         (691 letters)



>mm_chr1_13745265_13746355
          Length = 1091

 Score =  698 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Minus

                                                                        
Query: 323  caatatgccacctcccttttcaaggtcacctcataaagtatggtacttgctggagctcca 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 caatatgccacctcccttttcaaggtcacctcataaagtatggtacttgctggagctcca 1032

                                                                        
Query: 383  gctaccctgcatatttcattaaagccacaggagtgaagcaggggtgggaggacagtgaga 442
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1031 gctaccctgcatatttcattaaagccacaggagtgaagcagaggtgggaggacagtgaga 972

                                                                        
Query: 443  atgcattctcttccttctaatgactcttcccagaagtcccatatgagactgctacttgta 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  atgcattctcttccttctaatgactcttcccagaagtcccatatgagactgctacttgta 912

                                                                        
Query: 503  tttctttggctaaaaactagatgactaagccttcgttttgcttcttaaatttacaccaca 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  tttctttggctaaaaactagatgactaagccttcgttttgcttcttaaatttacaccaca 852

                                                                        
Query: 563  gtgtgctgagcttaaagtgttatcattctagaactgatgttggagcaggatgaaaagtgg 622
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 851  gtgtgctgagcttaaagtgttatctttctagaactgatgttggagcaggatgaaaagtgg 792

                                                                        
Query: 623  tgtctgctccaacccttattctaaatcatggtagaatattccttcctttcagaatatatg 682
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  tgtctgctccaacccttattctaaatcatggtagaatattccttcctttcagaatatatg 732

                     
Query: 683  acacttgaa 691
            |||||||||
Sbjct: 731  acacttgaa 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)