BAC Information

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BAC

Clone NameMSMg01-437K07
Chromosome1 (Build37)
Map Location 84,740,362 - 84,740,517
singlet/doubletsinglet
Overlap geneTrip12
Upstream gene5033414K04Rik, LOC100039638, Dner
Downstream geneFbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437K07.T7 (MSMg01no437_k07.b1)MSMg01-437K07.TJ (MSMg01no437_k07.g1)
ACCAG528427AG528428
length778758
length of high quality
(start - end)
156 (103 - 258)250 (74 - 323)
definitionCHROMAT_FILE: MSMg01no437_k07.b1 PHD_FILE: MSMg01no437_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:06 2005CHROMAT_FILE: MSMg01no437_k07.g1 PHD_FILE: MSMg01no437_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGC
GCGGAATTCTAAAACTATATCACATGCTACCAAACAGAACAGAACAAAAT
AAAGTACTACAACAAAAAACCTAGTTCACACTTGCCATATTGTATGAGTC
TTTGTCCAAATTCCAGCTCTTCCCAGAGGATTGCTCTCATCATCAGTAGA
TTCTCTTTCATCTTCAGCCTGCACACTGAATTGCCGCACTGCCTGATACA
CGGTCATGTTATATGGTAGTAAATGTTCTCCAATATAAAACTGTAGCCTG
TGCCTTACATTTCCCGAATTTACCATTCTAGTTTTCTGAATCCCACTTTT
ATTAGTCTGCCTTAGTATCTGATCCGCGCTTTCCACCCGAGATTTATCTG
CTTACGCTCCCTTTGTTTTGATCCCCCCCCCCATGTCCCTTTTTACTTAC
AACTCTTACCTCTATCCACCCTGACCATTACTTATCCGCAATGCTCCTCG
ACTGACTGCCTCTTTATTTTTCCGCCTCTCTACGTTATTCTCCCTACTTC
TCTTTTCCCTTTCGGATCACGCCACTCCTCTCCTATTTTACCCCCATCTC
CCGACCCTTTTTTTTTTTATATTTTTCGCTTCATCGCTATGCCTTACGTT
TACCTTCCCCTTGCCTCATACTTTTCTATTATTATTCCCCCCCCTTTGTT
TCCTTCTCCTCTCCTGTCCTCCTCTTCACATTTCCACATTCTCACTTCCT
CTATAATTTGTACCTTTCTTGTATATAT
NCACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTATTAGCTGGCTTTGAACTCATAG
AGACTTGCCTGCCCTGCTTCCTGAGCGCTACTCTTCAAGGCATGAGTGGC
AATGCCTTTCTTACGTTGATGGCTAATTGGGCGGCATATAGGTCTGTGTA
CCATGTGCATACCCTTGGAGGTCAGGAAGAGGGTATCAGATCTCCTGGGA
CTAGAGTGACAGGCAGTTCTGTGCTGTCGTGTGGGTGCTGGGAATCAAAC
TTGGATTCTCTGGAAGAGTTCTCTCATTTCTCTTAACTGCTGAACCATGT
CTCCAGACCCTGTCCCTCCTCCTCCTCCTGTTTTGTTTTGTTTTAGTTTT
TTTTTTTTTAACTTTTGGCGCGTTTTGTTTTGTTTTTGATACACGCTTTT
TCTGTTTAGTCTTGTTTGTCCCGGATTTCATCTTATTCCTCCTGTTTCTC
CTGTCTTCGCCCTCTTCCCCTGCCTCGTTCTTGCCCTTTTTCCCCCCCAT
TTCTTATCCTGATTTCCGCCTTTTTCCCCTGCTCGCTTTCCTTACACCTC
CTTTCTCTTCTTCTTTTTTCTCCGTCCCCCTCCTTACATACCTTTTCTTT
TCCTTTCTTCCTCCTTTCTTTTTTTTTTTTTTCCCCTACCATTCCCCTTA
ATCTCATATAACTCCTATTACCCTTCTCTCTTCTCCTTCTTTTCCATCTT
TCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_k07.b1 MSMg01no437_k07.b1 CHROMAT_FILE:
MSMg01no437_k07.b1 PHD_FILE: MSMg01no437_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:06 2005
         (156 letters)



>mm_chr1_84740162_84740717
          Length = 556

 Score =  279 bits (144), Expect = 8e-80
 Identities = 153/156 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtactacaacaaaaaacctagttcacacttgccatattgtatgagtctttgtccaaatt 60
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agtacaacaacaaaaaacctagttcagacttgccatattgtatgagtctttgtccaaatt 260

                                                                       
Query: 61  ccagctcttcccagaggattgctctcatcatcagtagattctctttcatcttcagcctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ccagctcttcccagaggattgctctcatcatcagtagattctctttcatcttcagcctgt 320

                                               
Query: 121 acactgaattgccgcactgcctgatacacggtcatg 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactgaattgccgcactgcctgatacacggtcatg 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)