BAC Information

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BAC

Clone NameMSMg01-437O03
Chromosome1 (Build37)
Map Location 158,350,734 - 158,532,981
singlet/doubletdoublet
Overlap geneSoat1, LOC100039026, Abl2
Upstream geneEG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991
Downstream geneTor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437O03.T7 (MSMg01no437_o03.b1)MSMg01-437O03.TJ (MSMg01no437_o03.g1)
ACCAG528609AG528610
length818812
length of high quality
(start - end)		237 (79 - 315)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no437_o03.b1 PHD_FILE: MSMg01no437_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:26 2005CHROMAT_FILE: MSMg01no437_o03.g1 PHD_FILE: MSMg01no437_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,532,745 - 158,532,981)(158,350,734 - 158,350,976)
sequence
AAGCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTAAGAATC
CGCGGAATTCAGCATTCTAACGTCTTTTCATCTTAGCAGAAGTGCATCAT
TGCCTATGTAGCAAAGGCAAAGATTATGACCTATCTAAGGGATGAGAGGA
ATGCGCCAATCCTCTTTCCCCCACGGAATTCCCAAAGTCAATGCAGCTAG
CACCTGGTACAGTGACCTCAATGCAAGCTTGGAGCTGACATTCCTTGGGA
GGGATTCTCTATAAACCTAGATCATTCCTAAAGATCTAGAATACAACCCT
TTGTAACATAAGCAGCCAGCTGTTTCTCTAATTTATGGAAGCATGCAACA
ACTGTGCATGTGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCATATCTTTTACACCCTCTCCCTTTCCCCTTTTCCCCTTCCC
CCACACCATTATCCAGCCTTCTACATTTTTTATGCTCTCTATGTCCATGC
CGTTTCACCCCTCTTTTTTCCCCCCCGTCATCTCCACTTTCCTCCCCCCG
TTCCCCTTTCCCCTTTACCCCCCCTCTCTTCTACTCTTATTTTATCCCCC
GCCCCTCACCTCTCTCCTTTATTTTTTTCCCCTTTTCCCGCTCCCCCTGT
CCTACCTTTTTATCCCTTCCTCATTCCCCCCCGCCCTGTACCTCCTCTTT
TCTTCCTCTCCCCCATAATATCTCCCTCTAATCTTGTTAGCTTCTCTCCA
TCCCTTCCTTTATTCCCCAAACAACTCCCCGTCCACTTTCATATCCTTCC
GCCCCCTCTTTAATATTN

CGCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTGGCGTGGTTTCCTTTCTTT
GGGGAGCCCTCTAAGATAACTTGACATGACAGAGATGGGGTATGGGTGGG
TCAGAGTCAGGGCCCAGCCCGGGAAAGTCAGGCTCCGCCTCCCTACAGAC
TGCGGGCGGGTCAGCGCGACCCAGCTCCGCGGGCGCGAGTGGGGCGGGGC
TCCCACGGTTCTTTCAGCAAAGTCCTAGGACTGCACTGTAGGAGTGCACG
ACACCGGCCGCTGTACCCACTTTTTTTGTTTGCCGCCTGGCGTCGGAAGG
CCATCCCTTTTCCGGAACGCCCTGCGTCGTCATAGCAACGCAGCACATTT
CTGCCCCCCTCTCCTACCCCCCCGTTCTCTTTGTTCTGTCCTTTTTCCCC
TTTTTCCTCTCTTTCTACTTTTTCCTTCCTTTCCTCCCTTTTATCTTCTT
TCCCTCTCCCCCCCTCTTTTCTCCTTGTCCCTTTCCTTGCCCTCCCTCTT
CTTCCCTTCTTTGTCCCTTCTTCTCCCCTCTCTCTTTCTCCCCTCCTTTT
CCCTCCCATCTCCCTTCTCTTTCCTCCTCCCGCTTCGTTCTTCTTCTTCT
CTTTTTCCTTTCTCTCTCTTCTTCCTTCCCTGTTTGTCTTCCTCTTTTTT
CCCCCCCTTCTTTTTGTCTTTACTGTCTCCCTTTCCTTTCCCCTTCTTTC
CCCTATAATCCTTCTCCTTACTTTTCTTCCAACTTCCCCTTTTTCTCTCT
TTCTCGTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_o03.b1 MSMg01no437_o03.b1 CHROMAT_FILE:
MSMg01no437_o03.b1 PHD_FILE: MSMg01no437_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:26 2005
         (237 letters)



>mm_chr1_158532545_158533181
          Length = 637

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcttagcagaagtgcatcattgcctatgtagcaaaggcaaagattatgacctatctaa 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||
Sbjct: 437 catcttagcagaagtgcatcattgcctatgtagcaaaggcaaagacaatgagctatctaa 378

                                                                       
Query: 61  gggatgagaggaatgcgccaatcctctttcccccacggaattcccaaagtcaatgcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggatgagaggaatgcgccaatcctctttcccccacggaattcccaaagtcaatgcagct 318

                                                                       
Query: 121 agcacctggtacagtgacctcaatgcaagcttggagctgacattccttgggagggattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 317 agcacctggtacagtgacctcaatgcaagcttggagctgacattccttgggagggattca 258

                                                                    
Query: 181 ctataaacctagatcattcctaaagatctagaatacaaccctttgtaacataagcag 237
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caataaacctagatcattcctaaagatctagaatacaaccctttgtaacataagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no437_o03.g1 MSMg01no437_o03.g1 CHROMAT_FILE:
MSMg01no437_o03.g1 PHD_FILE: MSMg01no437_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:26 2005
         (243 letters)



>mm_chr1_158350534_158351176
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctggcgtggtttcctttctttggggagccctctaagataacttgacatgacagagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctggcgtggtttcctttctttggggagccctctaagataacttgacatgacagagatg 260

                                                                       
Query: 61  gggtatgggtgggtcagagtcagggcccagcccgggaaagtcaggctccgcctccctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtatgggtgggtcagagtcagggcccagcccgggaaagtcaggctccgcctccctaca 320

                                                                       
Query: 121 gactgcgggcgggtcagcgcgacccagctccgcgggcgcgagtggggcggggctcccacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgcgggcgggtcagcgcgacccagctccgcgggcgcgagtggggcggggctcccacg 380

                                                                       
Query: 181 gttctttcagcaaagtcctaggactgcactgtaggagtgcacgacaccggccgctgtacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctttcagcaaagtcctaggactgcactgtaggagtgcacgacaccggccgctgtacc 440

              
Query: 241 cac 243
           |||
Sbjct: 441 cac 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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