BAC Information

Click to search

BAC

Clone NameMSMg01-437O15
Chromosome1 (Build37)
Map Location 195,263,128 - 195,263,613
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437O15.T7 (MSMg01no437_o15.b1)MSMg01-437O15.TJ (MSMg01no437_o15.g1)
ACCAG528633AG528634
length757771
length of high quality
(start - end)
477 (70 - 546)461 (79 - 539)
definitionCHROMAT_FILE: MSMg01no437_o15.b1 PHD_FILE: MSMg01no437_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:28 2005CHROMAT_FILE: MSMg01no437_o15.g1 PHD_FILE: MSMg01no437_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTACCTTTCCGTACAGATGTGATTTTTATACATAGAGTTTCAACGC
ACAGTTGGCTGAGTCCAGTCGGAGGATTGGAACCCACAGAACCTGTGGGT
GCAGAGGCTGAAGCAATCCCAACAGCCTCGACCACATGACTGACCAGTGC
TCCCAGTCAAACTCTTCACCCACGTGGAACTAACCAGAACTACCCAGCAC
TGCTAGGCTCATGTCACGGGTCAGAAGCCTTCACATCACATCCTTGGGCC
TCCCTCTGCACTGTGCCTGTTTTTCTGTCAGGCTCCATGGTAAGTTCCGA
CCCACCATCTCTTCCCCGCAGCATGCTGGTGGACATCCAACCATTGGCAA
GGTCTACTCTTCACCATTTGCTGATTTCCATACTGCAATACCGTAACCTG
GCAAGTTTTACGGTGCCAGCATGATATCATCAAACCCGAGGGAAAGATTT
TTGAGTGCATATCAATCATACCATTTCTACCTTACAGGTGGATGTATAAA
CAGACCAAGAACCTAGACAATAGACAAACGTGGTCAGATGTAAGGAAGTG
ATACTCTTACATATGTACTGCCCTTTTTGCTATCCAATCCTTAAATTTTG
GATCTATATAATATGATTTATAAGCGGCATGTGCAAACAAAAACCCACTT
GTGATTCCTAGCTCCGATGATCTGCAAAAAGGTCTCTTTGTACCCCGCGA
ATCATTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATTCAGTAACATTC
AAATTTACTTCTAGTAGAGACAGTGAAAGTAATCAGGCATTACAAATTTA
CTTGAATAGAGCTAGAAATCTAAGGGCTAGTTACATAGTAATTACTTAGA
ACAATAGCCAAGTCACTCCTATACACAGGAATTTACAATGGCATAGAAAG
AAGGTGGGCTGTGGTTTTAGGAGGAACTGTATGTAGTATTCTTCATGAAA
GGGTTAGTAGAACCAAATTCTTCTGGTGCGTGTTTTTCACTAGGCCCAGA
GAAACAGCATTTTAAGGTATTTACTAAAGGTCCACTGATGGCGGGTTTAA
CAATAGACTAGCATTGCATCAGAGCATTCACCTGGCTCCTGTGTTTAGCT
GATCTTAATTAAGGGTTGTTCCAATTCTCAGTTGTAAACACGGCCTGGCT
CCCCCTAGCTTTTTATGTATGCATTTTCTTTGTTTTGCGTCAATGCACCT
TGGCAGATGTATTCCCTAGCTTTCTCGTTTTTCTTCTGTATCAAAAGTCT
GGTGCCTGCTTGGTAAAATTACTATTCTGACACCCATTTCCCTTGTGTGC
ATATCTTGTCTGTCATCTGGGCTGACTCTTTGTTCTGCTGGCCTCAGATT
CCTTGAGTTCCCCTCGGTCTGTTACCTGGCATCCTTTGAACTTTCTCTCG
TTGAACGTAGTACCCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_o15.b1 MSMg01no437_o15.b1 CHROMAT_FILE:
MSMg01no437_o15.b1 PHD_FILE: MSMg01no437_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:28 2005
         (477 letters)



>mm_chr1_195263087_195263963
          Length = 877

 Score =  839 bits (434), Expect = 0.0
 Identities = 469/490 (95%), Gaps = 18/490 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgtgatttttatacatagagtttcaacgcacagttggctgagtccagtcggaggattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gatgtgatttttatacatagagtttcaacgcacagttggctgagtccagtcggaggattg 468

                                                                       
Query: 61  gaacccacagaacctgtgggtgcagaggctgaagcaatcccaacagcctcgaccacatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaacccacagaacctgtgggtgcagaggctgaagcaatcccaacagcctcgaccacatga 408

                                                                       
Query: 121 ctgaccagtgctcccagtcaaactcttcacccacgtggaactaaccagaactacccagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctgaccagtgctcccagtcaaactcttcacccacgtggaactaaccagaactacccagca 348

                                                                       
Query: 181 ctgctaggctcatgtcacgggtcagaagccttcacatcacatccttgggcctccctctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctgctaggctcatgtcacgggtcagaagccttcacatcacatccttgggcctccctctgc 288

                                                                       
Query: 241 actgtgcctgttttt----ctgtcaggctccatggtaagttccgacccaccatctcttcc 296
           ||||||||||    |    |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 287 actgtgcctg----tgcaactgtcaggctccatggtaagttcccacccaccatctcttcc 232

                                                                       
Query: 297 ccgcagcatgctggtggacatccaaccattg------g----caaggtctactcttcacc 346
           | ||||||||||||||||||| |||||||||      |    ||||||||||||||||||
Sbjct: 231 cagcagcatgctggtggacattcaaccattgtcatctgaatacaaggtctactcttcacc 172

                                                                       
Query: 347 atttgctgatttccatactgcaataccgtaacctggcaagttttacggtgccagcatgat 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atttgctgatttccatactgcaataccgtaacctggcaagttttacggtgccagcatgat 112

                                                                       
Query: 407 atcatcaaacccgagggaaagatttttgagtgcatatcaatcataccatttctaccttac 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 atcatcaaacccgagggaaagatttttgagtgcatatcaatcataccatttctaccttac 52

                     
Query: 467 aggtggatgt 476
           ||||||||||
Sbjct: 51  aggtggatgt 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)