NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATACATTTCTTTCTTTCCCCTTTATGAACATTAAAAATGCTAA
AAGAATACCTGATTTGTGATATAAGATCTGCTTACAAGTTTGGATATGAA
GTAATCTCCCAGGGAACTCATTTTGGAGATGACTGTGCAGGTGAAGTTCA
AAGAAGGGAGAGATGGAGATGGAGATTCATTGTTCATGCCAATATACATC
AAGTGCTGAGAACATTAGAGAAGCATGGATATAGAGAAATAAAGGTGTAC
CCTGAGGAGTCTGGCATCAAGGCCAGTGTAGTAGTAGAAGGAAATCAAAG
TGGCTGCCAAGTTAGAAGAACATGTGTTTTTGAGAGTGGCTGTAGGAGAC
TGGCCTTCCTGCTCTTATTTTAAGCTCAGTGACCCTCCCACACACAGACC
TCTGGCTATGTTGTGGTGTCATCATGCAAAGAGGGCTGAGAAACCTTGGA
AGGCTTGTGGGGATCTCTGTAGCTATTGTGACTCCTAAGCTGTAAAGAAT
GTATTTTAGAGAAGACTGGGCACTCTGAGGAATCTGCAAGGCTTACTTAA
TTGTTCTCACAGATCAACCTGGAAGAACAGTTGGCTCCATGGTTGCCACA
TCAGGAAAGCTCAGAGTGGCCTAAGCCCTTGACTTCCAAGTACTCAAAGG
TCCTGCTGGAATACTGGCTTGTTCGTAAGCCCTCTCTCTTTAGATCTCCT
TTAGACTGGG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTAACGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATA
AGTGGATATTAGCCCCCAACCTAGGATACCCAAGATATAAGATATAATTT
GCTAAACACCTGAAACTCACGGAGAATGAAGACTGGAGTGTGGACACTAT
GCCCCTCCTTN

Query= MSMg01no437_p09.b1 MSMg01no437_p09.b1 CHROMAT_FILE:
MSMg01no437_p09.b1 PHD_FILE: MSMg01no437_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:32 2005
         (612 letters)



>mm_chr1_6768293_6769304
          Length = 1012

 Score = 1152 bits (596), Expect = 0.0
 Identities = 608/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcatacatttctttctttcccctttatgaacattaaaaatgctaaaagaatacctg 60
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcatacatttcattcttccccctttatgaacattaaaaatgctaaaagaatacctg 753

                                                                       
Query: 61  atttgtgatataagatctgcttacaagtttggatatgaagtaatctcccagggaactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atttgtgatataagatctgcttacaagtttggatatgaagtaatctcccagggaactcat 693

                                                                       
Query: 121 tttggagatgactgtgcaggtgaagttcaaagaagggagagatggagatggagattcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tttggagatgactgtgcaggtgaagttcaaagaagggagagatggagatggagattcatt 633

                                                                       
Query: 181 gttcatgccaatatacatcaagtgctgagaacattagagaagcatggatatagagaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gttcatgccaatatacatcaagtgctgagaacattagagaagcatggatatagagaaata 573

                                                                       
Query: 241 aaggtgtaccctgaggagtctggcatcaaggccagtgtagtagtagaaggaaatcaaagt 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 572 aaggtgtaccctgaggagtctggcatcaaggccagtgtagtggtagaaggaaatcaaagt 513

                                                                       
Query: 301 ggctgccaagttagaagaacatgtgtttttgagagtggctgtaggagactggccttcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggctgccaagttagaagaacatgtgtttttgagagtggctgtaggagactggccttcctg 453

                                                                       
Query: 361 ctcttattttaagctcagtgaccctcccacacacagacctctggctatgttgtggtgtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctcttattttaagctcagtgaccctcccacacacagacctctggctatgttgtggtgtca 393

                                                                       
Query: 421 tcatgcaaagagggctgagaaaccttggaaggcttgtggggatctctgtagctattgtga 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 392 tcatgcaaagagggctgagaaaccttggagggcttgtggggatctctgtagctattgtga 333

                                                                       
Query: 481 ctcctaagctgtaaagaatgtattttagagaagactgggcactctgaggaatctgcaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctcctaagctgtaaagaatgtattttagagaagactgggcactctgaggaatctgcaagg 273

                                                                       
Query: 541 cttacttaattgttctcacagatcaacctggaagaacagttggctccatggttgccacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cttacttaattgttctcacagatcaacctggaagaacagttggctccatggttgccacat 213

                       
Query: 601 caggaaagctca 612
           ||||||||||||
Sbjct: 212 caggaaagctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)