Query= MSMg01no437_p16.b1 MSMg01no437_p16.b1 CHROMAT_FILE:
MSMg01no437_p16.b1 PHD_FILE: MSMg01no437_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:33 2005
(558 letters)
>mm_chr1_178139662_178140619
Length = 958
Score = 1023 bits (529), Expect = 0.0
Identities = 552/561 (98%), Gaps = 3/561 (0%)
Strand = Plus / Plus
Query: 1 taatggactggtgcagtatccacagcacaccctctgtccatgcggcacttccatctgatg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 198 taatggactggtgcagtatccacagcacaccctctgtccatgcggtacttccatctgatg 257
Query: 61 aagatatggatcaagtccaaatttgtttattttcagcttcatgagcaagccctccctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aagatatggatcaagtccaaatttgtttattttcagcttcatgagcaagccctccctaaa 317
Query: 121 atactgcaaaaa---aaataaataagagagacatttgctctcattatagcactggcgtat 177
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 318 atactgcaaaaaaataaataaataagagagacatttgctctcattatagcactggcatat 377
Query: 178 gtgctataatttttaatgctcttggcacgatctttaagaagaaactcagagccaaacaac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtgctataatttttaatgctcttggcacgatctttaagaagaaactcagagccaaacaac 437
Query: 238 tatctatgaagtgtcaccagacactaaagttacaggagatgtgaccttggacttgtggcc 297
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tatctatgaagtgtcaccagatactaaagttacaggagatgtgaccttggacttgtggcc 497
Query: 298 actggaaggctaagaaatgaatctgtgttgcttataaaagacccaatgaaaaatattttg 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 498 actggaaggctaagaaatgaatctgtgtttcttataaaagacccaatgaaaaatattttg 557
Query: 358 ttgtaataatctgaagagactcaggcaaagacctgaccagcgatgatgaattacaagggg 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 558 ttgtaataatctgaagagactcaggcaaagacctgaccagcaatgatgaattacaagggg 617
Query: 418 ccctcccttcacgattattgtgctacttgctccccatccccatctttgcctctttccaca 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cccttccttcacgattattgtgctacttgctccccatccccatctttgcctctttccaca 677
Query: 478 ctcagctctgatcagtagccagtgtggacaaatgtacctttacagcatagcctgcctcac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctcagctctgatcagtagccagtgtggacaaatgtacctttacagcatagcctgcctcac 737
Query: 538 tttacttctcatgtctcccag 558
|||||||||||||||||||||
Sbjct: 738 tttacttctcatgtctcccag 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_p16.g1 MSMg01no437_p16.g1 CHROMAT_FILE:
MSMg01no437_p16.g1 PHD_FILE: MSMg01no437_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:34 2005
(479 letters)
>mm_chr1_178299011_178299889
Length = 879
Score = 870 bits (450), Expect = 0.0
Identities = 468/474 (98%)
Strand = Plus / Minus
Query: 1 tctgtgatgagaatgatgtgtaaaaatgagactggacaatgttttgatcatttgtccaat 60
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 474 tctgtgaagagaatgatgtgtagaaatgagactggacaatgttttgatcatttgtccaat 415
Query: 61 cagatataggagcaattgattcgtaggaatattctgacaaagggaaattcagtggggcct 120
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 414 cagatataggagcaattgattcataggaatattctgacaaaggaaaattcagtggggcct 355
Query: 121 gtaaatttgttttagattcttcttgtgtctctgtatagctttcttgtctctgtgtattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtaaatttgttttagattcttcttgtgtctctgtatagctttcttgtctctgtgtattgg 295
Query: 181 atgaaacccaccttttcagggatagcctgcaagggtgaaggggaaaatgacctttttagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgaaacccaccttttcagggatagcctgcaagggtgaaggggaaaatgacctttttagg 235
Query: 241 atttatgaagattctagtttctatgacccagttcagaaatgaaggacaggagacaaaggg 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atttatgaagattctaatttctatgacccagttcagaaatgaaggacaggagacaaaggg 175
Query: 301 acagaaggcctgggggaacttgtttctgagagcttctaatcttctttactgctacgcaca 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 174 acagaaggcctgggggaacttgcttctgagagcttctaatcttctttactgctacgcaca 115
Query: 361 tcatgctaaggagccatagtttggggtaacgttgtatgagtcccatcagagtgagataaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tcatgctaaggagccatagtttggggtaacgttgtatgagtcccatcagagtgagataaa 55
Query: 421 tacaagaaataaggacagaatgagtggttaaggatgtggtaaacactgggggag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tacaagaaataaggacagaatgagtggttaaggatgtggtaaacactgggggag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
