BAC Information

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BAC

Clone NameMSMg01-437P21
Chromosome1 (Build37)
Map Location 76,816,533 - 76,816,848
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437P21.T7 (MSMg01no437_p21.b1)MSMg01-437P21.TJ (MSMg01no437_p21.g1)
ACCAG528692AG528693
length7901,302
length of high quality
(start - end)
336 (45 - 380)---
definitionCHROMAT_FILE: MSMg01no437_p21.b1 PHD_FILE: MSMg01no437_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:35 2005CHROMAT_FILE: MSMg01no437_p21.g1 PHD_FILE: MSMg01no437_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGTTGCCCTCTTTCACTTTCTCATAATAGCAGAGCCTCTAACAG
TTCTCACGCTGGTGAATAAAGAAAGATTTCTTGGCTGAGGAAATAACTAT
TGGAACAATAATGATGAAACTGGTACTTCTTTTTATCAGCAATTAATTGA
AAACCAGATGCCAGGTGGGACATTTGCACTTCCCACAGTCCTGGCAGCAG
AAAGTGTTTATGAAAGATGTCCCACTTATAGTTACAAAGGCCAATAGAAC
AGGTGCACTTGAGCCAAGTTTGAAAAAAACAACAACAAAAAAAGAAACTA
CAGTTCATATCAGGACAACAGTATTCTCTAGGCTAACTAGAGAAAATATG
GTACTGGAAAGAAAAACTGAATTTCTATTTTTTTTTTCAGGTTTCAACTT
TAGTGTACAATATTTGGTCACTTTGTCCTTGCCATGTTGCAGTGTTTTCC
ATTTAACAGACTCTATAATTTCTCTTAACCTATGCCTCCTAGGCACTCCT
TGTTAAGTTTATCTAACTTATCCTTGACCGAGGTTTGTATTTATACCTCC
TCGTACCTGAGACCTCTAATCTTCTCCTGTAATCATACTTTCATTGTTTA
CCTCTTTTCCAAATTCCTTCCCTCCTGTTTTCTTCTTTCTGCCCACTGCC
GCATTCTTTACACCCTACTTTAAAACAACTCACGTAACTCTTGCACCCGT
CTCCCTACCTTCGTTATTCTCCCCTTCTTCCCTTTATTCN
TAATGGCATAGGTGGAGTGTAAGGGCCTGGGGCGGGCCCGGCCCTGGTTT
CCCGTCCGAAACATTTTTAGGGTTGGACCCCTTAATTAGAATAGTTTTCC
CCGGCGCGAAAATTCCTTTAATCCAGGAAAAAGGACCTATTGGAAGAACC
GAATATTGGGAACCTGGAATTGAAAAAACCATAACCAAAACCAGGAACTA
AATTGGACCTGGTTCAATTCCCAAATAATTAAGGGAATCCAAGAAGGAAC
AATAATCTTCCTTGTTAAAAGAAGGGAACAATTGGAATATTAAGCCTAAT
CTTCTAATAATAACTAATAACCTATTGGCCCATAAAGGTCAACCCTGGTC
TGGCGCACTGGCCCTCCATATAACAATAAAGGTTCCATTAGTCTCTTTAA
AGGGCGCAAGAAACAGAAACATTTGCGAACTTTAAACCACAAATGAAATA
ACTATCTTGGTGAACAATCTCAAGGCTTATGGTCATATTGTAAAACGTTC
ACATTGCGACATGGATTATTACCTATTTACTCTACCCCTTAACCGCCCCT
CCAATAATGTCTATTCCTAATTGCACACCCTACCATTCCCACATCCCCCA
TTTGGCTCACCAAACATTTCATCATTCAATGGCCGGCCTGTGCCCACGTT
ACAAATCGCCTATTCTTCTTCAACTGGCTCTCCCAACCTATATCGTGTTA
ATCAACTACTATTTCTTACTAACCTTTCATCTCCATTTGGAACCTATCCC
CTCTCTACTCTCTTCTTCTACACTCTACTTTACTCTCTTTATCACCAACT
ACTCTCCTCCTCGTCTTATTTGCATCTTACTCATCTCTCACCCGACCTTC
TCTATTTTCACTCCTCTCTACACTTTTCTCTACCATTCAATTCATAATAT
CTATACCTCTCTTCTCGTCTCTCCTTACTCCCTCTATCTTATTCATCCCT
TTCTTCTTAAACCTCACTACTTACCCNACATACGCCTATCACTACCTCGT
ATATGCCATCCTTCATATATAATTCTCGCCTCTCCTAATCACTCNTTACT
CCGTCCTCACTATTACAGCCTTTCTTACTCCTCTCGTTAATCACCTGCCA
CACAGTTTATTACCGCTCCTACCTTCATTCTATNTCCTGTTAAACTCATC
ACTTATATCTCCACTCACTTCTCTATATATCCTCCCTCGCTTTGTTCGTC
CTCCTCCGCGCCTCATTNTAATCTTCGACTTCACACATCGCTCTTTACTC
CTTACTCATTTGTGATTCTATATCAACTCATCTATACTCTGCGTTATTCT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_p21.b1 MSMg01no437_p21.b1 CHROMAT_FILE:
MSMg01no437_p21.b1 PHD_FILE: MSMg01no437_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:35 2005
         (336 letters)



>mm_chr1_76816313_76817048
          Length = 736

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  tctttcactttctcataatagcagagcctctaacagttctcacgctggtgaataaagaaa 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 536 tctttcactttctcataatagcagagcctctaacagttctcacgctggtgaataaggaaa 477

                                                                       
Query: 81  gatttcttggctgaggaaataactattggaacaataatgatgaaactggtacttcttttt 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gatttcttggctgaggaaataactattggaacaataatgatgaaactggtacttcttttt 417

                                                                       
Query: 141 atcagcaattaattgaaaaccagatgccaggtgggacatttgcacttcccacagtcctgg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atcagcaattaattgaaaaccagatgccaggtgggacatttgcacttcccacagtcctgg 357

                                                                       
Query: 201 cagcagaaagtgtttatgaaagatgtcccacttatagttacaaaggccaatagaacaggt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cagcagaaagtgtttatgaaagatgtcccacttatagttacaaaggccaatagaacaggt 297

                                                                       
Query: 261 gcacttgagccaagtttgaaaaaaacaacaacaaaaaaagaaactacagttcatatcagg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gcacttgagccaagtttgaaaaaaacaacaacaaaaaaagaaactacagttcatatcagg 237

                           
Query: 321 acaacagtattctcta 336
           ||||||||||||||||
Sbjct: 236 acaacagtattctcta 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)