BAC Information

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BAC

Clone NameMSMg01-438B18
Chromosome1 (Build37)
Map Location 23,578,742 - 23,579,159
singlet/doubletsinglet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438B18.T7 (MSMg01no438_b18.b1)MSMg01-438B18.TJ (MSMg01no438_b18.g1)
ACCAG528781AG528782
length767785
length of high quality
(start - end)		547 (42 - 588)418 (71 - 488)
definitionCHROMAT_FILE: MSMg01no438_b18.b1 PHD_FILE: MSMg01no438_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:45 2005CHROMAT_FILE: MSMg01no438_b18.g1 PHD_FILE: MSMg01no438_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTACCTATTGCAAGAAGCTGGGCTACGTTTATTTCAGTTCAAAATCCC
TATATGAACACTTAGCACCTGCTGAATCCACGGGTTTTTAATATTTATTT
ATTTATTTATTTTTTCAGAATATGAAAATTTATTACTGTGTTTCCATTGT
CAAATTTTATGATCTTGGCCTTTCTTTCTTGCCTTTGTATAGAGCCAACA
GAGAAACATTGGCTACTTTAACCACCTTAAAGCGGACTCCAGGAATATCA
CCTACAGCATGACCTTTTCGACCAAATCCAGCAACCAGAACTTCATCATT
TTCCTCAATGAAGTTCAGGCAGCCATCATTTGGCACGAACGCTGTGATCT
TCTTGCCGTTCTTAATGAGCTGCACCCTGACGCACTTCCTGATGGCAGAA
TTTGGCTGTTTGGCCTCAACCCCTACTTTTTCCAGCACAATTCCCTTTGC
ATGAGAGGCACCCCCAAACAGATTGGCCTTCAGGGCTGTGCCCAAGTGGG
CTTTCTTGTACTGTTTGTCATGCCACTTCTGATCCCGTCGGTGACTGCGG
AGCTTCCGGGCAGTTCGGAGACCACGACACTTGTCCATCTTGCCGGCGCC
ACGGGCCCTAGAGAAAGAGAGACTAATATTTATTTTAAGGGTTGACCTTT
AGCTACCTCCAGAAGATCCAGGGAAAGTTTATTCCCCTAAGTGTTTATAA
GAAATTCTGGAAAATCG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCAGAAAGACTTCAGACTCAAAGGCTGGA
GTCAGAGAGAGAGGGGAGTGTGGACAGGCTGTCATTCTCACAGATAGATC
GAGAAAAAAGGAGAGCCCCTGGGTCTTCCATAAGGAGCAAAGATCTCTCT
GACCCAACTCCCGCTCTTCCACATCATAGCTTTCCTCTGTCCTGAGGCAT
TGTGGGTAACACTGAAGACCCATTCAGATGCATATTGTCTGTTCTATCTC
TTTTCTAATTTCTATTCATCTCTTGAGCTTGGACTATAAACCCATGTCTG
AGAACCTCATTTACTCTTATGGTCTCCGAAATGCTGTGTACCTAGCATCT
AAATGTGAGGTAGATGTGTGTAAAGCTAAATCATTTCCAGAGTGCAGTCC
CTGGTATTCGTAATTCCAGTGCTATGGAGAAATGAATAANATGTTTCGTG
TCAGAGGACAGATTTGTCTTTCTAGAAAGCGTTCCTTATCGGAGCCGTGG
GCTTACTTTTCTAGCGTCAGATAAAAATGACCTGCTCTAGTCATGGAGGC
AAGACAACCAAAAATCCTCTTCTTATTTTTCTTCACCTAAAAAAAATACT
GGTGGCCCATAGGGCCATTCCTGTCATTTTTTTGGCCGGGAAAATTTTAC
CATCTAAAAATTACTGGCCCGCACGAAACCCGAGCCCTTCCCCGGGGGAA
ATTATTTTTACCCCCCTCCCTTTCCCAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_b18.g1 MSMg01no438_b18.g1 CHROMAT_FILE:
MSMg01no438_b18.g1 PHD_FILE: MSMg01no438_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:45 2005
         (418 letters)



>mm_chr1_23578542_23579359
          Length = 818

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagaaagacttcagactcaaaggctggagtcagagagagaggggagtgtggacaggct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agcagaaagacttcagactcaaaggctggagtcagagagaaaggggagtgtggacaggct 260

                                                                       
Query: 61  gtcattctcacagatagatcgagaaaaaaggagagcccctgggtcttccataaggagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcattctcacagatagatcgagaaaaaaggagagcccctgggtcttccataaggagcaa 320

                                                                       
Query: 121 agatctctctgacccaactcccgctcttccacatcatagctttcctctgtcctgaggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatctctctgacccaactcccgctcttccacatcatagctttcctctgtcctgaggcat 380

                                                                       
Query: 181 tgtgggtaacactgaagacccattcagatgcatattgtctgttctatctcttttctaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgggtaacactgaagacccattcagatgcatattgtctgttctatctcttttctaatt 440

                                                                       
Query: 241 tctattcatctcttgagcttggactataaacccatgtctgagaacctcatttactcttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctattcatctcttgagcttggactataaacccatgtctgagaacctcatttactcttat 500

                                                                       
Query: 301 ggtctccgaaatgctgtgtacctagcatctaaatgtgaggtagatgtgtgtaaagctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtctccgaaatgctgtgtacctagcatctaaatgtgaggtagatgtgtgtaaagctaaa 560

                                                                     
Query: 361 tcatttccagagtgcagtccctggtattcgtaattccagtgctatggagaaatgaata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatttccagagtgcagtccctggtattcgtaattccagtgctatggagaaatgaata 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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