Query= MSMg01no438_g16.b1 MSMg01no438_g16.b1 CHROMAT_FILE:
MSMg01no438_g16.b1 PHD_FILE: MSMg01no438_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:11 2005
(483 letters)
>mm_chr1_20606664_20607546
Length = 883
Score = 880 bits (455), Expect = 0.0
Identities = 476/487 (97%), Gaps = 8/487 (1%)
Strand = Plus / Plus
Query: 1 aggctgaaagttcctctctaacaccaggcagaagtgaatagacaaatattcctaaaactc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctgagagttcctctctaacaccaggcagaagtgaatagacaaatattcctaaaactc 260
Query: 61 tagctctgagggtctctgaaagtttgaaaaccgtaatgaataagcccatatcattacata 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tagctctgagggtctctgaaagtttgaaaaccgtaatgaataagtccatatcattacata 320
Query: 121 tacgttaatgtaaatttctacaaaaacgctcaatgtggtagcagttacaaccgtttcaga 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tacgttaatgtaaatttctacaaaaacactcaatgtggtagcagttacaaccgtttcaga 380
Query: 181 acgccccagtagtttcacgacaagaatgtctagcaatgtctgcctgcccaattgtagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgccccagtagtttcacgacaagaatgtctagcaatgtctgcctgcccaattgtagtga 440
Query: 241 atttatcattttt----gtgtgtcctgtttaagatggcccaaaagagataataacttcta 296
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttatcat----acaggtgtgtcctgtttaagatggcccaaaagagataataacttcta 496
Query: 297 tttagttcaggactgggaaagtttattacatacccaatagatgctgaacattgtactgga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttagttcaggactgggaaagtttattacatacccaatagatgctgaacattgtactgga 556
Query: 357 agccaggggaaataaaagtctgtccttagtccccagcaaagaggaggcgtggagtctttt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agccaggggaaataaaagtctgtccttagtccccagcaaagaggaggcgtggagtctttt 616
Query: 417 gaggtttgaaaggagtgttgatgttaccaggtgtccttttaccttgtaaaatttcctaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaggtttgaaaggagtgttgatgttaccaggtgtccttttaccttgtaaaatttcctaca 676
Query: 477 cccttca 483
|||||||
Sbjct: 677 cccttca 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_g16.g1 MSMg01no438_g16.g1 CHROMAT_FILE:
MSMg01no438_g16.g1 PHD_FILE: MSMg01no438_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:11 2005
(409 letters)
>mm_chr1_20782601_20783408
Length = 808
Score = 714 bits (369), Expect = 0.0
Identities = 399/413 (96%), Gaps = 9/413 (2%)
Strand = Plus / Minus
Query: 1 acccttgatgtccataatggagaaggtggaaaggctcacctaacttggataccaggtcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acccttgatgtccataatggagaaggtggaaaggctcacctaacttggataccaggtcta 549
Query: 61 gagaggctctgtatggtaccagctgctgcagataacagctggatcattctggagttgtta 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 548 gagaggctctgtatggtaccaggtgctgcagataacagctggatcattctggagttgtta 489
Query: 121 ggttacaatacagcctttatagtttttctcatccgctttcctctcccactgtgtaacacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggttacaatacagcctttatagtttttctcatccgctttcctctcccactgtgtaacacg 429
Query: 181 cagagtggaatgaggcccagccctgtgcttcgtgagcctgcaaggcagaaaagggaatgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagagtggaatgaggcccagccctgtgcttcgtgagcctgcaaggcagaaaagggaatg- 370
Query: 241 tttt----ctcatctcctccccagatgcctcctccaccctttctccttcatccagctccc 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ---tagacctcatctcctccccagatgcctcctccaccctttctccttcatccagctccc 313
Query: 297 aagtcctcacctatgcaaagatgacctgtggcacacaggaaacccctttcatcctatctg 356
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||
Sbjct: 312 aagtcctcacctatgcaaagatgacctgtgtcacacaggagacccctttcat-ctgtctt 254
Query: 357 ccacagctcctccgccaaaattaggagacccggggactactgtcctgagtcat 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ccacagctcctccgccaaaattaggagacccggggactactgtcctgagtcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 808
Length adjustment: 9
Effective length of query: 400
Effective length of database: 799
Effective search space: 319600
Effective search space used: 319600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
