BAC Information

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BAC

Clone NameMSMg01-438J04
Chromosome1 (Build37)
Map Location 28,975,563 - 28,975,973
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614
Downstream geneEG623924, EG433283, LOC100040665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438J04.T7 (MSMg01no438_j04.b1)MSMg01-438J04.TJ (MSMg01no438_j04.g1)
ACCAG529135AG529136
length744748
length of high quality
(start - end)
466 (45 - 510)149 (81 - 229)
definitionCHROMAT_FILE: MSMg01no438_j04.b1 PHD_FILE: MSMg01no438_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:24 2005CHROMAT_FILE: MSMg01no438_j04.g1 PHD_FILE: MSMg01no438_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTGTATTTCCGAATAGAATTTTCACAAGACCAAAGGTCTCTCCT
GCCATTGATGGCCAACTAGGCCATTCTCTACTACATATGCAGCTAGAGAA
ACTAGTCCTACCATGTGTTTTCTTTGGTTGGTGGTTTAGTCCCAGGGAGC
TTTGGTGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATAGTGCTGTAG
ACCAATTCAGGCCTTGGGTACTTTCTCGAGCTCCTTCATTGGGGACCCTG
GAGCACAGGCTCATTTTATTTGTTATTTATAAGCATGCCCGGGTAAAAAT
GTTAACTTTCAAAATAGTAATTTAAAAATTCTGAGATTGAATTTCGTATT
ATAACCCAATTCATATTACAACCCATGTATCTTCTCACATAGTTTAAAGT
CTGCACATTCTGCAAAATCTGGATAGCACAGAGTTGTAATATTTTTCTTT
GTTCCGAAATCGATTGATGGTGGTATTTTGGTACATGATGTCAGAACACT
TGCTGTGTTCTGCAGTGGTCTGGTGAATTAATTATGTCTAATTCCTCCTC
TTCGGACTTAGCTTTTCTTCTAGAATAGATCAAAACTTGAAGTATTGCTG
CCATAGCCTTTGATGCTTTTGATTCTAGATCAATGTACTATTACCTTTTT
TTTATTCGCTTTGACAAGAACCACTGGCTAAAAAATTTTTATTT
TTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAATTAACTCTATACCCC
ATTTTTAAATTGTTTTATTTGGTTTTCTGGGTTCAGCCTTCTTGATTTAT
TTGTATATTTTGGATATTATCACTCTATTAAATGTAGGTTTAGTAAAGAT
CTTTTTCCCGTCTGTGGATTTGTCCTACTGACAGTGTCCTTTGCCTTGTA
GAAGCCTTTCAGTTTTGTGAGGTCCCAGTTGTTAATTGTTGAACTTTGAG
CCTGAGTTATTGATATTCTGTTCAGAAAAATTTCTCCTGTGTCAATGTGT
TCAAGGGTATTTTCTACTCTCTTTTCTATTCAATTCAGTTTATCTGGGTT
TATGCGGAGGTCCTTGATCCACTCTGCCCTGAGTTTTGTTCAAGGGAGAA
AGAATGCGGCCATTTGCACTTTTCTACAGGCATACTGGCCGGTTAGAACC
TATACCTTTTGTTGAAAATGGTTTCCCCCCCCCTCATTGAATGGTTTTGG
TCTTCTTTGCCAAATATTTTATTTGATCATTGCAGCTATGTGTTCCTATT
TTCGTGTCTTCTGTCCCTTTTCACTTTTATTTTTTTTTTTTTTGGTTTTT
TTACTCTTGTAATGTTTTTTGTTTTTCTGTGCTAGAGTCTTTGTGTTTAC
CTCCCTTCTTCTTACTTTCTTTTTTTTTTTATTCTTTTTATTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_j04.b1 MSMg01no438_j04.b1 CHROMAT_FILE:
MSMg01no438_j04.b1 PHD_FILE: MSMg01no438_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:24 2005
         (466 letters)



>mm_chr1_28975107_28975974
          Length = 868

 Score =  644 bits (333), Expect = 0.0
 Identities = 391/411 (95%), Gaps = 2/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 58  ccattgatggccaactaggccattctctactacatatgcagctagagaaactagtcctac 117
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 867 ccattgatggccaactaagccatcctctactacatatgcagctagagaaactagtcctac 808

                                                                       
Query: 118 catgtgttttctttggttggtggtttagtcccagggagctttggtggtactggttagttc 177
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 807 catgtgttttctttggttggtggtttagtcccagggaggtttggtggtactggttagttc 748

                                                                       
Query: 178 atattgttgttcctcctatagtgctgtagaccaattcaggccttgggtactttctcgagc 237
           |||||||||||||||||||||||||| ||||  |||||||||||||||||||||| ||||
Sbjct: 747 atattgttgttcctcctatagtgctgcagactgattcaggccttgggtactttcttgagc 688

                                                                       
Query: 238 tccttcattggggaccctggagcacaggctcattttatttgttatttataagcatgcccg 297
           || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 687 tctttcatttgggaccctggagcacaggctcattttatttgttatttataagcatgccca 628

                                                                       
Query: 298 ggtaaaaa--tgttaactttcaaaatagtaatttaaaaattctgagattgaatttcgtat 355
           || |||||  ||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 627 ggaaaaaaagtgttaactttcaaaataataatttaaaaattctgagattgaatttcatat 568

                                                                       
Query: 356 tataacccaattcatattacaacccatgtatcttctcacatagtttaaagtctgcacatt 415
           ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct: 567 tataacccaattcatattagaatctatgtatcttctcacatagtttaaagtctgcacatt 508

                                                              
Query: 416 ctgcaaaatctggatagcacagagttgtaatatttttctttgttccgaaat 466
           ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 507 ctgcaaaatctggatagcagaaagttgtaatatttttctttgttccgaaat 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 868
Length adjustment: 10
Effective length of query: 456
Effective length of database: 858
Effective search space:   391248
Effective search space used:   391248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)