BAC Information

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BAC

Clone NameMSMg01-438M13
Chromosome1 (Build37)
Map Location 139,083,433 - 139,083,807
singlet/doubletsinglet
Overlap geneLOC100042567
Upstream gene2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438M13.T7 (MSMg01no438_m13.b1)MSMg01-438M13.TJ (MSMg01no438_m13.g1)
ACCAG529295AG529296
length754789
length of high quality
(start - end)
248 (64 - 311)376 (71 - 446)
definitionCHROMAT_FILE: MSMg01no438_m13.b1 PHD_FILE: MSMg01no438_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:41 2005CHROMAT_FILE: MSMg01no438_m13.g1 PHD_FILE: MSMg01no438_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTATACGACTCCTATTTCTACACATCCGCGGAATTCTGGT
GTTTGCCTGAACGTCTGCCTTTATGTGTTACTTTGACCTTTTTCCCTTAC
TACTTTTAATATTCTGTCATTATTTAGTGCATTTGTTGTTCTGATAATTA
TGTGTCTGGAGGAATTTCTTTTCTGGTCCACTCTATTTGGAGTCCTGTAG
GCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGGTTAAAGAATTTTTC
TTCTATAGTTTTGTTGAAGATATTTACTGGCTCTTTAGGATGGGAATCTA
ACCTCTAATCTCTTCTATACCTATCATCCTTACATTTGATCTTCTCATTG
TGTCCTGAATTTCCTGAATGTTTTGGGTTAGGAGCTTTGTGCATTTTGCA
TTTTCTTTGACTATTGTGTCAATGTTTTCTATGGTATCTTCTGCACCTGA
GATTCTCTCTTCTATATCTTGTATTATGTTGGTGATGCTTGCATCTATGA
CTCCTGATCTCTTTCCTAGGTTTTCTATCTCCAGGGTTGTCTCCCTTTGT
GACTTCCTTATTGTTTCTATTTCCATTTTTAGAACCTGAATGATTTTATA
CAATTCCTTCATCTGTTTGTTTGCGTTTCCTGCAATTCTTTAATGTATTT
TTTGTTCCTCCTTAATTTCTTCATGTTTTTTTTCTGTGCTTTTCTTTTAT
TTACCTATTGTGGGAATATGTTGCTACCCTTTTTCAGCTCTCTTTTTTGC
TTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTCCTTTGATCATCCAAAAAGGTTTCCA
ACCCTGTAGGTGGTCCTAATTAACAGGGAGCTGTGATCTTTTTCTGCAAA
ACTCCCAAGCCAGGCAGTAGAACACATTCTATTAATGCTTCCTGATGCCA
TATTAGTCAAATGACGGTGTCTCCCCAGACACACAACTGTTTACAAATGT
GTGTTTGCCGTTTCTTATCTAAATATCCTCAGGGTTCCTGTAATCAATTA
TATTATCTCGTCACAGACTAAGAGTGTTTCACACTTAGAATAAGTTCCTG
GTCTCAATAATCCACATCTGAATTATGGTCTGCCTGTGCTTGAATTTGCA
TAATCTCTGGGGGTTGGAGACGGGTATAAGGGTGTGTGTGTGNNNNNNNN
NTNNNNNTTTNNNTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTCTTTTTTTTTTTTTTTTTTCCCCTTTTTTCTCCCTTCT
TCTTTTTTTCTCTTCTTCTTCCCTCTTCTCTCTCTCCCTCCCCCCTCTCT
TTCTTCTTCCTCTTTCCTTTTCCTCTCCTTCTTTTCTCTCTCTCTCCCCC
TCGTCTTTTTTCCTTCTTCTCTTTCCTTTTCCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_m13.g1 MSMg01no438_m13.g1 CHROMAT_FILE:
MSMg01no438_m13.g1 PHD_FILE: MSMg01no438_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:41 2005
         (376 letters)



>mm_chr1_139083233_139084011
          Length = 779

 Score =  679 bits (351), Expect = 0.0
 Identities = 368/377 (97%), Gaps = 7/377 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcctttgatcatccaaaaaggtttccaaccctgtaggtggtcctaattaacagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcctttgatcatccaaaaaggtttccaaccctgtaggtggtcctaattaacagggag 260

                                                                       
Query: 61  ctgtgatctttttctgcaaaactcccaagccaggcagtagaacacattctattaatgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgatctttttctgcaaaactcccaagccaggcagtagaacacattctattaatgctt 320

                                                                       
Query: 121 cctgatgccatattagtcaaatgac-----ggtgtctccccagacacacaactgtttaca 175
           |||||||||||||||||||||||||       |||||||||||||||||||||| |||||
Sbjct: 321 cctgatgccatattagtcaaatgactaata--tgtctccccagacacacaactgcttaca 378

                                                                       
Query: 176 aatgtgtgtttgccgtttcttatctaaatatcctcagggttcctgtaatcaattatatta 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgtgtgtttgccgtttcttatctaaatatcctcagggttcctgtaatcaattatatta 438

                                                                       
Query: 236 tctcgtcacagactaagagtgtttcacacttagaataagttcctggtctcaataatccac 295
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcttgtcacagactaagagtgtttcacacttagaataagttcctggtctcaataatccac 498

                                                                       
Query: 296 atctgaattatggtctgcctgtgcttgaatttgcataatctctgggggttggagacgggt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atctgaattatggtctgcctgtgcttgaatttgcataatctctgggggttggagacgggt 558

                            
Query: 356 ataagggtgtgtgtgtg 372
           |||||||||||||||||
Sbjct: 559 ataagggtgtgtgtgtg 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 779
Length adjustment: 9
Effective length of query: 367
Effective length of database: 770
Effective search space:   282590
Effective search space used:   282590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)