BAC Information

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BAC

Clone NameMSMg01-438O23
Chromosome1 (Build37)
Map Location 154,216,753 - 154,217,145
singlet/doubletsinglet
Overlap genenone
Upstream gene1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
Downstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438O23.T7 (MSMg01no438_o23.b1)MSMg01-438O23.TJ (MSMg01no438_o23.g1)
ACCAG529411AG529412
length784814
length of high quality
(start - end)
422 (47 - 468)177 (73 - 249)
definitionCHROMAT_FILE: MSMg01no438_o23.b1 PHD_FILE: MSMg01no438_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:54 2005CHROMAT_FILE: MSMg01no438_o23.g1 PHD_FILE: MSMg01no438_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCGTTTTTGCGCTGGAGAAAGCAATCTACATTTCATACAGAA
ACGTGTAGCTTAAAAAGGTCAGAAACAGCCGGGTGTGGTGGTGCACGCCT
TTAATCCCAGCACTCGGAAGGCAGAAAGCAGGTGGATTTCTGAGTTCGAG
GCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGGGCTACACAGAG
AAACCTTGTCTTGAAAAACCAAAACCAAAAACAAAACAAAACAACATAAA
AAGGTGAGATCACTGAGTCAGAGCTAGGTATACAAGACCAAAATGGCCTT
TTAGGTCTAAGGCCGGCACTCAGTTTCATTGTGCAGTTTGGATTGTTGAT
TTCAGAATGCTCTGTGGCTTAACGCTGTTCTGCCAGAGCCAGCTAGATGC
CTGCTAATGTGAGCAATGCCCCGACAGTCTGAGGGGAGGAAAGGGAAGCA
TCTCATCTCAGTGAAACAACTCGGTGAACTGGCCTGGTTAATTTTGTACT
TGAGTTTACCTAAGACCTTTTCTCTTAAATAATAGAGGCCTGAAGAAAAA
AATGGGAAACCATGGTTCTTTATAAACCACCCAAACATGGTTGTATGATA
ATTTGTGTCTTAAAAATGGCCTGTGTTTTTTTCGGGGGCCCCCTTGTCAC
AAAAAAGGGTTGTAAATATACCTATTCCCAACTGCGGGGTCAATTTTCTT
GGGGTTTCTCGTGAAAATATCCTTTTTTTTCCTT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCATAGTAATTTGCTTTTAC
CCTGATGTGCACGAATGAGTAATGTGTCTTGCATCTATCTGTCTGTTTCT
TCTCTTTCTCTTCTTTCCGTCCTCTTTTTCCCTACCCCTCCCCTCCCTCC
TTCTCCCCCGNTGTCTCTCTTTTCTCTTTCTGTGTGCTCCCCCCTCTTGT
GTGTGAGATATAACTTCATTCTTCATCCTGNCTAAATAAAACTCTATCGT
GTATACATATCTCACTTTTATCCACTCCATCTGTTAATGAATTATTCAGT
TTGGTTTGATGGCCCTGGCTATTGGGGATCCCGTAAGGGTAACCACCCCA
AATGGGGCCAAAATTCCCGGTTGGGAGGCCCCCCTTTAAATTCCCCCAAG
AAAAAAACGGGCCGGAATTTTTTTATAGGGGGTGGTGGAAAAAAAACTTT
TTTTTTGTTGGGAAAAAAACCCCCTTTTTTTTTTTTTTCTCCCCCCTTCC
TTTCTTTTGTTTGGGTTTTCCCGNCTTTTTTTTTTTTTTTTTTTTAACCC
NCCCCTCTTCTTCTCTCTCTTTGTATATATTTATGTTTNNNTATTACCTT
TCTTTTTCTTCTCTCCTTTTCTTCCTCCACTTTTTTTCTTTTCACTCATC
CATCCCCTTTAGCTATCTCCCTCCTCTTTTTATTTTATATCCCTTACTTT
TTTCTTACTACTTTACTATCTCTTTCACCCTCTTCACCAAGCCCACCACT
TTTCATTCATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_o23.b1 MSMg01no438_o23.b1 CHROMAT_FILE:
MSMg01no438_o23.b1 PHD_FILE: MSMg01no438_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:54 2005
         (422 letters)



>mm_chr1_154216325_154217145
          Length = 821

 Score =  704 bits (364), Expect = 0.0
 Identities = 385/394 (97%), Gaps = 5/394 (1%)
 Strand = Plus / Minus

                                                                       
Query: 33  gcaatctacatttcatacagaaacgtgtagcttaaaaaggtcagaaacagccgggtgtgg 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gcaatctacatttcatacagaaacgtgtagcttaaaaaggtcagaaacagccgggtgtgg 762

                                                                       
Query: 93  tggtgcacgcctttaatcccagcactcggaaggc----agaaagcaggtggatttctgag 148
           ||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 761 tggcgcacgcctttaatcccagcactcggaaggcagaaagaaagcaggtggatttctgag 702

                                                                       
Query: 149 ttcgaggccagcctggtctacagagtgagttccaggacagtcagggctacacagagaaac 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttcgaggccagcctggtctacagagtgagttccaggacagtcagggctacacagagaaac 642

                                                                       
Query: 209 cttgtcttgaaaaaccaaaaccaaaaacaaaacaaaacaacataaaaaggtgagatcact 268
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 641 cctgtcttgaaaaaccaaaaccaaaaccaaaacaaaacaacataaaaaggtgagatcact 582

                                                                       
Query: 269 gagtcagagctaggtatacaagaccaaaatggccttttaggtctaaggccggcactcagt 328
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gagtcagagctaggta-acaagaccaaaatggccttttaggtctaaggccggcactcagt 523

                                                                       
Query: 329 ttcattgtgcagtttggattgttgatttcagaatgctctgtggcttaacgctgttctgcc 388
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 522 ttcattgtgcagtttggattgttgatttcagaatgctctgtggcttaaagctgttctgcc 463

                                             
Query: 389 agagccagctagatgcctgctaatgtgagcaatg 422
           ||||||||||||||||||||||||||||||||||
Sbjct: 462 agagccagctagatgcctgctaatgtgagcaatg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 821
Length adjustment: 9
Effective length of query: 413
Effective length of database: 812
Effective search space:   335356
Effective search space used:   335356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)